Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018217 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.7e-117 426.0 213 100.0
CSS0041948 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.4e-116 422.9 213 99.1
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 1.2e-102 376.7 202 90.6
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 3.2e-100 368.6 204 87.3
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 1.2e-99 366.7 202 87.6
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 1.6e-99 366.3 202 87.1
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 3.5e-99 365.2 209 83.7
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 7.9e-99 364.0 202 86.1
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 7.9e-99 364.0 202 86.1
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 1.0e-98 363.6 202 86.1
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 1.0e-98 363.6 202 86.1
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 1.0e-98 363.6 202 87.6
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 1.3e-98 363.2 209 83.7
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 1.7e-98 362.8 202 85.6
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 2.3e-98 362.5 202 85.6
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 3.0e-98 362.1 202 86.1
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 3.0e-98 362.1 204 86.8
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 3.9e-98 361.7 202 86.6
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 6.6e-98 360.9 202 86.1
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 6.6e-98 360.9 209 83.3
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.5e-97 359.8 209 82.8
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 2.5e-97 359.0 202 84.7
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.5e-97 359.0 209 82.8
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 2.5e-97 359.0 209 82.8
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 2.5e-97 359.0 204 85.3
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 4.3e-97 358.2 200 86.0
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 4.3e-97 358.2 209 81.3
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 7.3e-97 357.5 209 81.8
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 7.3e-97 357.5 209 81.8
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 9.6e-97 357.1 202 90.6
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 9.6e-97 357.1 202 84.2
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 9.6e-97 357.1 209 81.8
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.6e-96 356.3 204 84.8
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 2.8e-96 355.5 209 80.9
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 6.2e-96 354.4 209 82.8
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 6.2e-96 354.4 209 80.9
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 6.2e-96 354.4 209 81.3
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 8.1e-96 354.0 209 81.3
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 1.1e-95 353.6 209 80.9
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 1.1e-95 353.6 209 79.9
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 2.4e-95 352.4 209 79.9
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 3.1e-95 352.1 209 80.4
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 4.0e-95 351.7 202 83.7
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 4.0e-95 351.7 202 82.2
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 5.3e-95 351.3 211 78.7
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 5.3e-95 351.3 209 80.9
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 6.9e-95 350.9 209 80.4
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 6.9e-95 350.9 202 83.2
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 9.0e-95 350.5 202 81.7
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 1.5e-94 349.7 209 79.9
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 1.5e-94 349.7 209 80.9
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 2.0e-94 349.4 204 81.4
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.4e-94 348.6 209 80.4
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 4.5e-94 348.2 209 80.4
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 9.9e-94 347.1 209 79.4
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 9.9e-94 347.1 202 81.7
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 2.2e-93 345.9 209 78.0
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 3.8e-93 345.1 202 83.2
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 3.8e-93 345.1 209 78.9
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 4.9e-93 344.7 202 81.2
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 6.4e-93 344.4 202 81.7
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 8.4e-93 344.0 209 77.0
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 1.1e-92 343.6 202 81.2
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 1.1e-92 343.6 209 78.5
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 1.1e-92 343.6 202 81.2
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 1.4e-92 343.2 209 78.9
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 1.9e-92 342.8 209 78.0
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 3.2e-92 342.0 209 78.5
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 4.2e-92 341.7 209 78.9
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 2.1e-91 339.3 209 77.5
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 2.1e-91 339.3 209 75.6
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 2.7e-91 339.0 209 78.9
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 3.5e-91 338.6 204 77.9
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 6.0e-91 337.8 207 79.2
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 6.0e-91 337.8 209 75.1
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 6.0e-91 337.8 209 75.1
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 6.0e-91 337.8 209 78.5
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 7.9e-91 337.4 202 78.2
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 7.9e-91 337.4 209 77.0
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 1.3e-90 336.7 209 75.6
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 1.8e-90 336.3 209 78.5
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 2.3e-90 335.9 204 78.9
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 3.0e-90 335.5 209 75.1
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 3.9e-90 335.1 209 74.6
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 5.1e-90 334.7 209 78.0
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 5.1e-90 334.7 202 79.7
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 5.1e-90 334.7 202 78.7
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 6.7e-90 334.3 210 73.3
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 6.7e-90 334.3 211 77.3
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 8.7e-90 334.0 209 75.1
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 8.7e-90 334.0 202 77.7
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 8.7e-90 334.0 209 77.5
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 1.9e-89 332.8 202 79.7
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 1.9e-89 332.8 202 79.7
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 1.9e-89 332.8 202 79.7
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 3.3e-89 332.0 209 78.9
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 4.3e-89 331.6 202 79.2
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 7.4e-89 330.9 209 77.0
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 7.4e-89 330.9 209 77.0
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 7.4e-89 330.9 209 77.0
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 7.4e-89 330.9 209 77.0
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 9.6e-89 330.5 202 79.2
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 1.3e-88 330.1 207 78.3
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 1.6e-88 329.7 200 79.5
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 1.6e-88 329.7 205 75.6
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 1.6e-88 329.7 209 77.0
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 2.1e-88 329.3 209 76.6
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 3.7e-88 328.6 209 76.6
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 4.8e-88 328.2 207 77.8
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 6.2e-88 327.8 202 79.7
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 3.1e-87 325.5 202 76.7
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 2.0e-86 322.8 210 77.1
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 2.6e-86 322.4 209 74.2
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 4.5e-86 321.6 202 76.7
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.0e-85 320.5 203 74.4
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 1.3e-85 320.1 202 76.2
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 1.3e-85 320.1 202 74.8
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.3e-85 320.1 202 74.8
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 3.8e-85 318.5 202 72.8
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 3.8e-85 318.5 202 72.8
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 6.5e-85 317.8 202 73.8
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 1.1e-84 317.0 203 75.9
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 9.3e-84 313.9 209 70.8
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 2.1e-83 312.8 202 72.8
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 2.3e-82 309.3 202 74.8
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 5.1e-82 308.1 209 71.8
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 6.7e-82 307.8 209 70.8
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 7.4e-81 304.3 209 70.3
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 3.1e-79 298.9 209 65.6
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 3.4e-78 295.4 209 68.9
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 2.9e-77 292.4 201 68.2
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.2e-76 288.9 200 73.5
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 3.2e-76 288.9 202 66.8
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 7.2e-76 287.7 202 67.3
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 2.3e-74 282.7 209 61.7
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 5.7e-73 278.1 203 63.1
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 1.1e-71 273.9 207 61.4
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 6.9e-71 271.2 203 61.1
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 1.7e-69 266.5 211 66.4
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 8.5e-69 264.2 202 58.9
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 3.0e-66 255.8 143 84.6
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 8.8e-66 254.2 202 58.4
Cfa007905 Carpinus fangiana HOM05D003321 ORTHO05D005161 3.3e-65 252.3 140 88.6
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 9.1e-63 244.2 202 57.4
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 1.9e-60 236.5 198 56.6
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 2.3e-50 203.0 159 64.2
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 4.4e-49 198.7 208 55.8
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 5.9e-46 188.3 103 88.3
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 3.4e-41 172.6 94 90.4
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 1.3e-37 160.6 112 70.5
unitig_899.g15508 Utricularia gibba HOM05D007118 ORTHO05D008957 4.4e-33 145.6 94 70.2
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 7.5e-33 144.8 97 73.2
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 1.3e-32 144.1 112 67.9
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 1.4e-31 140.6 206 40.3
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 2.4e-31 139.8 201 36.8
Lsat_1_v5_gn_6_49381 Lactuca sativa HOM05D003321 ORTHO05D033839 1.2e-30 137.5 84 71.4
BcaB01g02066 Brassica carinata HOM05D003321 ORTHO05D005161 1.0e-29 134.4 142 55.6
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 2.0e-25 120.2 210 31.0
Actinidia36023 Actinidia chinensis HOM05D003321 ORTHO05D013943 1.5e-20 104.0 64 71.9
Cfa021690 Carpinus fangiana HOM05D003321 ORTHO05D005161 4.9e-16 89.0 237 24.9
BolC2t11553H Brassica oleracea HOM05D003321 ORTHO05D033839 2.3e-13 80.1 70 57.1
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 5.0e-13 79.0 63 63.5
ECA236G4825 Erigeron canadensis HOM05D003321 ORTHO05D186893 5.2e-10 68.9 139 30.2


User provided reference genes

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