Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017980 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 9.8e-89 330.1 166 100.0
CSS0043109 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 2.3e-85 318.9 166 97.6
CSS0030096 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 2.3e-74 282.3 155 92.3
CSS0001527 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 4.0e-74 281.6 152 93.4
Actinidia08978 Actinidia chinensis HOM05D001537 ORTHO05D002595 6.6e-45 184.5 160 63.1
Rhsim08G0221300 Rhododendron simsii HOM05D001537 ORTHO05D002595 1.2e-41 173.7 158 62.7
vmacro18913 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 1.7e-40 169.9 158 60.8
Dinv30509 Davidia involucrata HOM05D001537 ORTHO05D002595 1.5e-33 146.7 164 54.3
Hma1.2p1_0092F.1_g046630 Hydrangea macrophylla HOM05D001537 ORTHO05D013980 5.8e-25 118.2 162 48.8
Lj5A60G62 Lonicera japonica HOM05D001537 ORTHO05D013980 6.5e-24 114.8 159 41.5
TWI12G1035 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 6.1e-22 108.2 166 44.0
Potri.001G180200 Populus trichocarpa HOM05D001537 ORTHO05D002595 8.7e-21 104.4 163 41.1
GSVIVG01017107001 Vitis vinifera HOM05D001537 ORTHO05D013980 8.7e-21 104.4 165 41.2
Atru.chr1.3271 Acer truncatum HOM05D001537 ORTHO05D002595 4.3e-20 102.1 165 43.0
QL05p024197 Quercus lobata HOM05D001537 ORTHO05D002595 3.1e-18 95.9 169 42.0
MD17G1195000 Malus domestica HOM05D001537 ORTHO05D002595 6.9e-18 94.7 163 39.3
TAR636G3516 Trochodendron aralioides HOM05D001537 ORTHO05D002595 6.9e-18 94.7 177 41.2
Cfa002066 Carpinus fangiana HOM05D001537 ORTHO05D002595 9.0e-18 94.4 166 44.0
Ciclev10024801m.g Citrus clementina HOM05D001537 ORTHO05D002595 1.2e-17 94.0 159 45.3
Haze_16429 Corylus avellana HOM05D001537 ORTHO05D002595 2.6e-17 92.8 166 43.4
CiPaw.01G239300 Carya illinoinensis HOM05D001537 ORTHO05D002595 7.2e-15 84.7 165 40.0
Prupe.3G071000 Prunus persica HOM05D001537 ORTHO05D002595 9.4e-15 84.3 167 37.7
Manes.11G047500 Manihot esculenta HOM05D001537 ORTHO05D002595 2.1e-14 83.2 165 39.4
CAN.G438.67 Capsicum annuum HOM05D001537 ORTHO05D002595 1.0e-13 80.9 157 36.9
RcHm_v2.0_Chr2g0137871 Rosa chinensis HOM05D001537 ORTHO05D002595 4.3e-12 75.5 166 35.5
Nitab4.5_0000671g0080 Nicotiana tabacum HOM05D001537 ORTHO05D002595 1.7e-11 73.6 164 32.9
Duzib235G1517 Durio zibethinus HOM05D001537 ORTHO05D002595 1.4e-10 70.5 163 35.0
Solyc03g120200.2 Solanum lycopersicum HOM05D001537 ORTHO05D002595 1.4e-10 70.5 157 32.5
Eucgr.F03013 Eucalyptus grandis HOM05D001537 ORTHO05D002595 5.3e-10 68.6 160 35.0
Sopen03g039070 Solanum pennellii HOM05D001537 ORTHO05D002595 6.9e-10 68.2 157 32.5
Thecc.06G087400 Theobroma cacao HOM05D001537 ORTHO05D002595 1.2e-09 67.4 162 37.0
COL.COLO4_30371 Corchorus olitorius HOM05D001537 ORTHO05D002595 2.0e-09 66.6 162 36.4
QL05p024080 Quercus lobata HOM05D001537 ORTHO05D013980 2.0e-09 66.6 166 33.7
ClCG09G002140 Citrullus lanatus HOM05D001537 ORTHO05D002595 3.4e-09 65.9 167 33.5
Nn8g39217 Nelumbo nucifera HOM05D001537 ORTHO05D002595 3.4e-09 65.9 164 37.2
QL05p023971 Quercus lobata HOM05D000071 ORTHO05D000029 4.5e-09 65.5 159 34.6
Cpa.g.c31806.2 Carica papaya HOM05D008736 ORTHO05D010193 3.8e-08 62.4 154 30.5
Sc21g0005110 Simmondsia chinensis HOM05D001537 ORTHO05D002595 3.8e-08 62.4 161 31.1
Cc04_g03430 Coffea canephora HOM05D001537 ORTHO05D002595 5.0e-08 62.0 130 35.4
MSTRG.11077 Avicennia marina HOM05D001537 ORTHO05D002595 1.6e-06 57.0 162 32.7
EL10Ac9g22000 Beta vulgaris HOM05D001537 ORTHO05D002595 1.6e-06 57.0 161 30.4
PGR102G0923 Punica granatum HOM05D001537 ORTHO05D002595 1.6e-06 57.0 158 29.7
FvH4_6g31180 Fragaria vesca HOM05D001537 ORTHO05D002595 6.1e-06 55.1 131 34.4
FAN14G4499 Fragaria x ananassa HOM05D001537 ORTHO05D002595 6.1e-06 55.1 131 34.4


User provided reference genes

Program Settings