Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 0.0e+00 1425.6 731 100.0
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 0.0e+00 1177.5 793 77.9
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1119.8 761 76.3
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1114.4 748 76.6
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1105.9 753 76.2
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1103.2 753 76.0
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 0.0e+00 1101.3 741 75.8
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1099.0 754 75.3
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 0.0e+00 1098.2 741 76.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 0.0e+00 1097.0 753 76.2
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1096.6 748 75.8
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1094.3 748 74.9
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1094.3 750 75.1
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 0.0e+00 1090.5 751 74.6
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1090.1 753 75.6
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 0.0e+00 1085.1 746 74.9
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 748 74.7
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1083.9 750 74.8
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1083.2 758 74.1
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 0.0e+00 1082.8 753 74.5
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1081.2 748 74.7
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 0.0e+00 1080.9 753 74.5
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1080.1 744 75.9
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 0.0e+00 1078.5 747 75.4
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 0.0e+00 1077.8 746 74.0
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.0e-311 1073.2 696 79.2
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 2.0e-311 1072.0 746 74.5
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 1.3e-310 1069.3 751 73.9
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 2.9e-310 1068.1 741 74.6
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 2.9e-310 1068.1 750 73.3
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 5.0e-310 1067.4 746 74.0
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 6.5e-310 1067.0 751 72.8
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 4.2e-309 1064.3 757 72.4
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 2.1e-308 1062.0 751 73.5
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 6.0e-308 1060.4 759 73.1
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 1.0e-307 1059.7 756 72.8
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 3.0e-307 1058.1 747 74.6
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 5.1e-307 1057.4 754 72.9
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 5.1e-307 1057.4 781 70.8
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 8.7e-307 1056.6 746 73.9
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 1.1e-306 1056.2 777 71.9
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 3.3e-306 1054.7 755 73.9
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 5.7e-306 1053.9 743 73.5
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 7.4e-306 1053.5 755 72.8
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 7.4e-306 1053.5 751 74.3
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 1.6e-305 1052.4 751 73.9
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 2.1e-305 1052.0 740 73.5
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 3.7e-305 1051.2 755 73.2
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 3.7e-305 1051.2 750 73.1
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 1.1e-304 1049.7 749 72.9
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 1.4e-304 1049.3 752 73.3
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 1.4e-304 1049.3 743 73.6
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 1.8e-304 1048.9 750 72.9
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 3.4e-303 1044.6 755 71.4
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 5.8e-303 1043.9 791 69.4
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 1.7e-302 1042.3 754 72.7
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 1.7e-302 1042.3 735 73.9
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 3.8e-302 1041.2 750 71.9
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 8.4e-302 1040.0 748 71.8
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.9e-301 1038.9 753 72.4
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.5e-301 1038.5 753 72.1
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 2.7e-300 1035.0 749 71.2
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 3.5e-300 1034.6 754 71.4
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 2.3e-299 1031.9 751 71.5
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 3.0e-299 1031.6 753 71.7
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.0e-299 1031.6 738 72.8
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 5.1e-299 1030.8 752 70.9
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 8.7e-299 1030.0 709 75.7
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 5.7e-298 1027.3 740 70.8
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 746 71.8
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 6.3e-297 1023.8 745 71.9
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 6.3e-297 1023.8 758 71.5
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 2.4e-296 1021.9 782 69.4
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 5.3e-296 1020.8 745 71.7
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 6.9e-296 1020.4 769 69.1
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 6.1e-292 1007.3 748 71.4
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 6.7e-291 1003.8 748 68.9
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 1.7e-289 999.2 745 71.0
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 2.8e-289 998.4 747 70.7
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.0e-286 989.9 753 69.6
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.2e-285 983.8 753 69.9
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.6e-284 982.6 755 67.9
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 5.1e-283 977.6 743 69.2
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 6.7e-283 977.2 749 68.5
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 3.7e-281 971.5 747 68.8
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 7.0e-280 967.2 714 70.0
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.0e-278 963.4 651 75.9
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.0e-278 963.4 655 75.9
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 8.8e-275 950.3 698 70.2
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.1e-274 949.9 641 76.3
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.7e-273 946.0 749 68.1
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 8.0e-260 900.6 832 58.2
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 8.8e-259 897.1 537 85.1
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 2.0e-247 859.4 736 60.2
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.5e-245 852.4 737 61.9
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.6e-242 842.4 712 63.2
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 7.8e-239 830.9 502 84.9
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 7.6e-226 787.7 555 74.1
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 8.9e-219 764.2 553 71.8
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 2.7e-215 752.7 607 65.2
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.1e-204 716.5 517 72.7
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 9.0e-179 631.3 620 54.5
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.8e-172 609.8 680 53.5
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 6.5e-169 598.6 428 71.0
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 2.5e-168 596.7 462 68.6
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 6.3e-164 582.0 435 68.3
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.5e-160 570.1 440 68.2
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.2e-156 557.0 400 72.5
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 8.8e-142 508.4 418 63.6
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 4.4e-141 506.1 434 61.5
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 1.3e-140 504.6 431 60.8
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 5.6e-128 462.6 370 64.3
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.3e-126 457.2 370 63.8
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 4.9e-124 449.5 495 53.5
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 5.4e-99 366.3 222 82.9
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 3.6e-95 353.6 225 78.2
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 9.0e-94 349.0 261 72.8
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 5.7e-72 276.6 230 64.3
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 6.7e-65 253.1 160 79.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 3.1e-62 244.2 168 72.0
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.2e-61 242.3 139 89.2
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 4.4e-56 223.8 305 45.2
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.0e-53 214.9 141 75.2
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 5.9e-53 213.4 156 70.5
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 2.1e-50 204.9 202 59.4
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.8e-49 201.8 309 43.7
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 7.4e-48 196.4 131 75.6
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.5e-43 182.2 93 91.4
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 2.2e-39 168.3 105 81.0
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 6.3e-39 166.8 111 78.4
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 2.7e-37 161.4 294 37.4
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 5.9e-37 160.2 148 60.8
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 4.2e-35 154.1 143 60.1
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.3e-33 148.3 135 59.3
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 3.5e-29 134.4 91 71.4
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 4.7e-26 124.0 86 74.4
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 2.8e-23 114.8 96 60.4
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 6.3e-23 113.6 132 47.7
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 5.0e-20 104.0 144 47.9
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 3.3e-19 101.3 71 69.0
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 6.8e-17 93.6 172 41.9
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.0e-16 92.0 58 70.7
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 2.6e-16 91.7 125 40.8
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 7.5e-16 90.1 58 69.0
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 1.8e-14 85.5 79 54.4
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.4e-14 85.1 52 78.8
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 4.6e-13 80.9 52 75.0
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 4.3e-11 74.3 73 54.8
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 4.7e-10 70.9 108 41.7
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.4e-08 64.7 36 88.9
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 5.8e-08 63.9 52 69.2


User provided reference genes

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