Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017184 Camellia sinensis var. sinensis HOM05D001232 ORTHO05D001073 1.5e-51 206.1 116 100.0
Dinv24143 Davidia involucrata HOM05D001232 ORTHO05D001073 2.7e-37 158.7 121 83.5
Dinv16008 Davidia involucrata HOM05D001232 ORTHO05D001073 1.7e-34 149.4 120 68.3
CSS0004261 Camellia sinensis var. sinensis HOM05D001232 ORTHO05D001073 2.5e-30 135.6 128 70.3
CSS0017505 Camellia sinensis var. sinensis HOM05D001232 ORTHO05D001073 5.5e-30 134.4 126 72.2
Actinidia00311 Actinidia chinensis HOM05D001232 ORTHO05D002018 9.4e-30 133.7 118 61.0
Hma1.2p1_1093F.1_g256320 Hydrangea macrophylla HOM05D001232 ORTHO05D001073 5.2e-28 127.9 86 81.4
Hma1.2p1_0908F.1_g235510 Hydrangea macrophylla HOM05D001232 ORTHO05D001073 8.8e-28 127.1 121 62.0
Lj9A347T53 Lonicera japonica HOM05D001232 ORTHO05D001073 1.7e-26 122.9 119 72.3
Rhsim05G0101600 Rhododendron simsii HOM05D001232 ORTHO05D001073 8.2e-26 120.6 120 60.8
Actinidia28027 Actinidia chinensis HOM05D001232 ORTHO05D001073 1.0e-23 113.6 119 66.4
DCAR_021905 Daucus carota HOM05D001232 ORTHO05D001073 4.7e-21 104.8 131 48.9
CANSAT54G1915 Cannabis sativa HOM05D001232 ORTHO05D001073 2.3e-20 102.4 117 61.5
CiPaw.05G028800 Carya illinoinensis HOM05D001232 ORTHO05D001073 3.0e-20 102.1 117 51.3
CiPaw.06G158400 Carya illinoinensis HOM05D001232 ORTHO05D001073 2.6e-19 99.0 116 50.9
Cfa004846 Carpinus fangiana HOM05D001232 ORTHO05D001073 4.4e-19 98.2 117 49.6
Haze_10501 Corylus avellana HOM05D001232 ORTHO05D001073 4.4e-19 98.2 117 49.6
Cc02_g20830 Coffea canephora HOM05D001232 ORTHO05D001073 5.7e-19 97.8 94 58.5
Rhsim11G0141800 Rhododendron simsii HOM05D001232 ORTHO05D001073 9.7e-19 97.1 124 48.4
PGSC0003DMG400033576 Solanum tuberosum HOM05D001232 ORTHO05D001073 1.1e-17 93.6 88 59.1
Solyc01g106030.4 Solanum lycopersicum HOM05D001232 ORTHO05D001073 1.8e-17 92.8 88 59.1
Sopen01g048410 Solanum pennellii HOM05D001232 ORTHO05D001073 1.8e-17 92.8 88 59.1
QL11p025478 Quercus lobata HOM05D001232 ORTHO05D001073 4.5e-16 88.2 119 57.1
Nn1g05618 Nelumbo nucifera HOM05D001232 ORTHO05D001073 5.9e-16 87.8 118 47.5
TAR625G0059 Trochodendron aralioides HOM05D001232 ORTHO05D001073 1.7e-15 86.3 119 53.8
vmacro01867 Vaccinium macrocarpon HOM05D001232 ORTHO05D001073 2.2e-15 85.9 89 60.7
Nitab4.5_0001773g0050 Nicotiana tabacum HOM05D001232 ORTHO05D001073 2.9e-15 85.5 139 45.3
CsaV3_7G006810 Cucumis sativus L. HOM05D001232 ORTHO05D001073 5.0e-15 84.7 118 42.4
ClCG09G016150 Citrullus lanatus HOM05D001232 ORTHO05D001073 6.5e-15 84.3 118 43.2
Nn5g29835 Nelumbo nucifera HOM05D001232 ORTHO05D001073 6.5e-15 84.3 118 46.6
MELO3C018614.2 Cucumis melo HOM05D001232 ORTHO05D001073 1.1e-14 83.6 118 42.4
Nitab4.5_0001636g0090 Nicotiana tabacum HOM05D001232 ORTHO05D001073 3.2e-14 82.0 91 51.6
Lsat_1_v5_gn_7_83621 Lactuca sativa HOM05D001232 ORTHO05D001073 4.2e-14 81.6 89 57.3
vmacro19962 Vaccinium macrocarpon HOM05D001232 ORTHO05D001073 4.2e-14 81.6 87 56.3
Manes.07G041300 Manihot esculenta HOM05D001232 ORTHO05D001073 5.5e-14 81.3 115 47.0
Thecc.02G128100 Theobroma cacao HOM05D001232 ORTHO05D001073 9.4e-14 80.5 117 50.4
Gohir.D13G049200 Gossypium hirsutum HOM05D001232 ORTHO05D001073 1.6e-13 79.7 114 49.1
Gorai.013G055000 Gossypium raimondii HOM05D001232 ORTHO05D001073 1.6e-13 79.7 114 48.2
Gohir.A12G016900 Gossypium hirsutum HOM05D001232 ORTHO05D001073 2.1e-13 79.3 119 42.9
Lsat_1_v5_gn_5_110200 Lactuca sativa HOM05D001232 ORTHO05D001073 4.7e-13 78.2 90 54.4
COL.COLO4_32405 Corchorus olitorius HOM05D001232 ORTHO05D001073 8.0e-13 77.4 116 48.3
TAR628G0927 Trochodendron aralioides HOM05D001232 ORTHO05D001073 8.0e-13 77.4 119 45.4
CAN.G504.86 Capsicum annuum HOM05D001232 ORTHO05D001073 1.0e-12 77.0 53 67.9
Gohir.D12G017600 Gossypium hirsutum HOM05D001232 ORTHO05D001073 1.0e-12 77.0 117 48.7
Gorai.008G017800 Gossypium raimondii HOM05D001232 ORTHO05D001073 1.0e-12 77.0 117 48.7
Oeu014200.1 Olea europaea HOM05D001232 ORTHO05D001073 1.0e-12 77.0 92 53.3
Oeu063546.2 Olea europaea HOM05D001232 ORTHO05D001073 1.4e-12 76.6 93 53.8
Sed0001654 Sechium edule HOM05D001232 ORTHO05D001073 1.8e-12 76.3 120 44.2
Solyc10g047640.3 Solanum lycopersicum HOM05D001232 ORTHO05D001073 1.8e-12 76.3 71 54.9
Sopen10g018050 Solanum pennellii HOM05D001232 ORTHO05D001073 1.8e-12 76.3 71 54.9
MD05G1048600 Malus domestica HOM05D001232 ORTHO05D001073 5.2e-12 74.7 78 51.3
Manes.10G097400 Manihot esculenta HOM05D001232 ORTHO05D001073 5.2e-12 74.7 86 54.7
Gohir.A13G050400 Gossypium hirsutum HOM05D001232 ORTHO05D001073 1.5e-11 73.2 111 50.5
Duzib248G1459 Durio zibethinus HOM05D001232 ORTHO05D001073 2.6e-11 72.4 118 47.5
ECA234G3978 Erigeron canadensis HOM05D001232 ORTHO05D001073 4.4e-11 71.6 52 69.2
Peaxi162Scf00003g03239 Petunia axillaris HOM05D001232 ORTHO05D001073 7.5e-11 70.9 83 51.8
ECA236G4190 Erigeron canadensis HOM05D001232 ORTHO05D001073 9.8e-11 70.5 65 60.0
MD10G1055000 Malus domestica HOM05D001232 ORTHO05D001073 1.7e-10 69.7 78 50.0
SGA_v2.0_scaffold83G26382 Striga asiatica HOM05D001232 ORTHO05D001073 1.7e-10 69.7 84 47.6
GSVIVG01012518001 Vitis vinifera HOM05D001232 ORTHO05D001073 1.7e-10 69.7 57 61.4
Duzib052G0514 Durio zibethinus HOM05D001232 ORTHO05D001073 3.7e-10 68.6 120 45.0
Peaxi162Scf00299g00543 Petunia axillaris HOM05D001232 ORTHO05D001073 3.7e-10 68.6 85 51.8
Eucgr.F02157 Eucalyptus grandis HOM05D001232 ORTHO05D001073 4.8e-10 68.2 82 43.9
SGA_v2.0_scaffold32G12932 Striga asiatica HOM05D001232 ORTHO05D001073 4.8e-10 68.2 84 45.2
HanXRQChr10g0297751 Helianthus annuus HOM05D001232 ORTHO05D001073 6.3e-10 67.8 90 48.9
unitig_62.g23632 Utricularia gibba HOM05D001661 ORTHO05D001575 6.3e-10 67.8 57 61.4
MELO3C011079.2 Cucumis melo HOM05D001232 ORTHO05D001073 8.3e-10 67.4 81 48.1
MSTRG.20276 Avicennia marina HOM05D001232 ORTHO05D001073 1.4e-09 66.6 87 49.4
PGR031G1342 Punica granatum HOM05D001232 ORTHO05D001073 1.4e-09 66.6 80 47.5
SalBow6G0692 Salvia bowleyana HOM05D001232 ORTHO05D001073 1.8e-09 66.2 79 50.6
Sed0006585 Sechium edule HOM05D001232 ORTHO05D001073 3.1e-09 65.5 82 45.1
SalBow6G4583 Salvia bowleyana HOM05D001232 ORTHO05D001073 4.1e-09 65.1 79 49.4
Aqoxy5G01361 Aquilegia oxysepala HOM05D001232 ORTHO05D001073 7.0e-09 64.3 80 46.2
CsaV3_2G030180 Cucumis sativus L. HOM05D001232 ORTHO05D001073 9.1e-09 63.9 81 46.9
Nitab4.5_0001259g0110 Nicotiana tabacum HOM05D001232 ORTHO05D001073 1.2e-08 63.5 95 45.3
Nitab4.5_0005273g0020 Nicotiana tabacum HOM05D001232 ORTHO05D001073 1.6e-08 63.2 83 48.2
Prupe.1G534300 Prunus persica HOM05D001232 ORTHO05D001073 1.6e-08 63.2 79 46.8
QL09p018123 Quercus lobata HOM05D001232 ORTHO05D001073 1.6e-08 63.2 89 43.8
ClCG08G011600 Citrullus lanatus HOM05D001232 ORTHO05D001073 2.0e-08 62.8 81 44.4
Haze_22478 Corylus avellana HOM05D001232 ORTHO05D001073 2.0e-08 62.8 91 42.9
Dinv42600 Davidia involucrata HOM05D001232 ORTHO05D001073 7.7e-08 60.8 77 45.5
Migut.B00543 Erythranthe guttata HOM05D001232 ORTHO05D001073 1.3e-07 60.1 62 54.8
SHI20390 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-07 59.7 77 41.6
FvH4_5g34500 Fragaria vesca HOM05D001232 ORTHO05D001073 2.3e-07 59.3 84 40.5
FAN04G1280 Fragaria x ananassa HOM05D001232 ORTHO05D001073 2.3e-07 59.3 84 40.5
FAN08G1999 Fragaria x ananassa HOM05D001232 ORTHO05D001073 2.3e-07 59.3 84 40.5
FAN13G2176 Fragaria x ananassa HOM05D001232 ORTHO05D001073 2.3e-07 59.3 84 40.5
FAN18G0814 Fragaria x ananassa HOM05D001232 ORTHO05D001073 2.3e-07 59.3 84 40.5
Hma1.2p1_0010F.1_g006580 Hydrangea macrophylla HOM05D001232 ORTHO05D001073 2.3e-07 59.3 76 47.4
MD08G1200800 Malus domestica HOM05D001232 ORTHO05D001073 2.9e-07 58.9 86 43.0
MD15G1387700 Malus domestica HOM05D001232 ORTHO05D001073 3.8e-07 58.5 85 38.8
CiPaw.08G056800 Carya illinoinensis HOM05D001232 ORTHO05D001073 6.6e-07 57.8 81 43.2
HanXRQChr16g0514521 Helianthus annuus HOM05D001232 ORTHO05D001073 6.6e-07 57.8 99 40.4
RcHm_v2.0_Chr7g0235141 Rosa chinensis HOM05D001232 ORTHO05D001073 8.6e-07 57.4 82 40.2
PGR042G3046 Punica granatum HOM05D001232 ORTHO05D001073 1.1e-06 57.0 80 38.8
Dinv44870 Davidia involucrata HOM05D001232 ORTHO05D001073 1.5e-06 56.6 78 38.5
Cpa.g.sc155.28 Carica papaya HOM05D001232 ORTHO05D001073 1.9e-06 56.2 63 52.4
Potri.007G116550 Populus trichocarpa HOM05D001232 ORTHO05D001073 2.5e-06 55.8 127 38.6
Gohir.D06G030500 Gossypium hirsutum HOM05D001232 ORTHO05D001073 3.3e-06 55.5 89 39.3
Sed0013011 Sechium edule HOM05D001232 ORTHO05D001073 7.2e-06 54.3 81 42.0


User provided reference genes

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