Gene: Sopen10g018050

General Information

Structural Information

Species Solanum pennellii
Gene Identifier Sopen10g018050
Transcript Identifier Sopen10g018050.2
Gene Type Coding gene
Location Spenn-ch10 : 48632750-48644481 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D001232
#Genes/#Species 504/97
Phylogenetic origin

ID ORTHO05D001073
#Genes/#Species 500/97
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid Sopen10g018050.2

Descriptions

Short descriptions
Ortholog descriptions

Description member of a novel family of plant-specific GATA-type transcription factors. | ZIM-like 1 (ZML1) | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Tify , CCT domain | BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated
GO:0007623	ISO	PLAZA Integrative Orthology	circadian rhythm	AT4G24470

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding
GO:0043565	IEA	InterPro	sequence-specific DNA binding
GO:0005515	IEA	InterPro	protein binding
GO:0042802	ISO	PLAZA Integrative Orthology	identical protein binding	AT4G24470
GO:0000976	ISO	PLAZA Integrative Orthology	transcription cis-regulatory region binding	AT4G24470

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT4G24470

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR010399	Tify domain
IPR000679	Zinc finger, GATA-type
IPR013088	Zinc finger, NHR/GATA-type
IPR010402	CCT domain

Mapman id	Description
15.5.1.3.2	RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (C-GATA)