Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017125 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.4e-114 416.4 228 100.0
CSS0011943 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 2.8e-110 402.1 228 97.8
Rhsim07G0083500 Rhododendron simsii HOM05D004154 ORTHO05D004988 4.9e-30 135.6 151 63.6
Potri.001G093700 Populus trichocarpa HOM05D004154 ORTHO05D004988 1.4e-29 134.0 156 55.8
Sabra01G0069600 Salix brachista HOM05D004154 ORTHO05D004988 1.4e-29 134.0 153 60.8
CSS0019694 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.7e-27 127.1 183 51.4
SalBow1G2286 Salvia bowleyana HOM05D004154 ORTHO05D004988 3.9e-27 125.9 183 54.1
SalBow1G6205 Salvia bowleyana HOM05D004154 ORTHO05D004988 3.9e-27 125.9 183 54.1
Glyma.05G215500 Glycine max HOM05D004154 ORTHO05D004988 1.5e-26 124.0 184 51.1
AUR62019814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 1.9e-26 123.6 198 46.0
CSS0031879 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 2.1e-25 120.2 90 78.9
Cfa012835 Carpinus fangiana HOM05D004154 ORTHO05D004988 2.3e-24 116.7 169 47.9
PSO135G0371 Papaver somniferum HOM05D004154 ORTHO05D004988 8.9e-24 114.8 187 46.5
CDE03G0409 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 1.2e-23 114.4 156 53.2
Gohir.A11G024000 Gossypium hirsutum HOM05D004154 ORTHO05D004988 2.0e-23 113.6 187 48.1
Dinv38854 Davidia involucrata HOM05D000337 ORTHO05D000297 4.4e-23 112.5 142 52.1
Ca_17492_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 9.8e-23 111.3 185 42.7
Prupe.5G115800 Prunus persica HOM05D004154 ORTHO05D004988 1.3e-22 110.9 184 51.6
Potri.003G138000 Populus trichocarpa HOM05D004154 ORTHO05D004988 2.2e-22 110.2 153 49.0
AUR62010814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 6.4e-22 108.6 198 40.4
Aqoxy7G00145 Aquilegia oxysepala HOM05D004154 ORTHO05D004988 2.4e-21 106.7 190 48.4
vmacro13908 Vaccinium macrocarpon HOM05D004154 ORTHO05D004988 2.4e-21 106.7 181 46.4
Duzib068G1416 Durio zibethinus HOM05D004154 ORTHO05D004988 3.2e-21 106.3 167 49.7
Gohir.D11G023700 Gossypium hirsutum HOM05D004154 ORTHO05D004988 7.0e-21 105.1 187 44.4
Nn3g19070 Nelumbo nucifera HOM05D004154 ORTHO05D004988 1.2e-20 104.4 184 44.6
Gorai.007G025500 Gossypium raimondii HOM05D004154 ORTHO05D004988 2.0e-20 103.6 187 43.3
Phvul.002G296700 Phaseolus vulgaris HOM05D004154 ORTHO05D004988 2.0e-20 103.6 185 44.3
FAN04G1279 Fragaria x ananassa HOM05D004154 ORTHO05D004988 2.7e-20 103.2 170 50.0
FAN04G2754 Fragaria x ananassa HOM05D004154 ORTHO05D004988 2.7e-20 103.2 170 50.0
HanXRQChr17g0535161 Helianthus annuus HOM05D004154 ORTHO05D004988 2.7e-20 103.2 167 50.9
VMungo0251G3674 Vigna mungo HOM05D004154 ORTHO05D004988 4.6e-20 102.4 170 48.2
Lalb_Chr05g0224221 Lupinus albus HOM05D004154 ORTHO05D004988 6.0e-20 102.1 168 45.8
QL02p031322 Quercus lobata HOM05D004154 ORTHO05D004988 7.8e-20 101.7 186 46.8
MBI07_g24338_MAGBIO Magnolia biondii HOM05D004154 ORTHO05D004988 1.0e-19 101.3 145 45.5
arahy.Tifrunner.gnm1.ann1.1D56YB Arachis hypogaea HOM05D004154 ORTHO05D004988 1.3e-19 100.9 185 43.2
arahy.Tifrunner.gnm1.ann1.Y783I6 Arachis hypogaea HOM05D004154 ORTHO05D004988 1.3e-19 100.9 185 43.2
Glyma.08G021700 Glycine max HOM05D004154 ORTHO05D004988 1.3e-19 100.9 185 45.9
Oeu061093.1 Olea europaea HOM05D004154 ORTHO05D004988 2.3e-19 100.1 183 45.4
Cc08_g15820 Coffea canephora HOM05D004154 ORTHO05D004988 3.0e-19 99.8 145 55.2
COL.COLO4_21713 Corchorus olitorius HOM05D004154 ORTHO05D004988 3.0e-19 99.8 182 47.3
SGA_v2.0_scaffold173G39085 Striga asiatica HOM05D004154 ORTHO05D004988 3.0e-19 99.8 184 47.3
MSTRG.25659 Avicennia marina HOM05D004154 ORTHO05D004988 3.9e-19 99.4 148 52.0
FvH4_5g04120 Fragaria vesca HOM05D004154 ORTHO05D004988 3.9e-19 99.4 169 49.7
FAN18G0035 Fragaria x ananassa HOM05D004154 ORTHO05D004988 3.9e-19 99.4 169 49.7
FAN18G2617 Fragaria x ananassa HOM05D004154 ORTHO05D004988 3.9e-19 99.4 170 51.8
Medtr8g099305 Medicago truncatula HOM05D004154 ORTHO05D004988 8.6e-19 98.2 184 42.4
Manes.02G012100 Manihot esculenta HOM05D004154 ORTHO05D004988 1.9e-18 97.1 165 47.3
Sed0017887 Sechium edule HOM05D004154 ORTHO05D004988 1.9e-18 97.1 196 47.4
TAR374G1070 Trochodendron aralioides HOM05D004154 ORTHO05D004988 2.5e-18 96.7 115 52.2
Cpa.g.sc122.41 Carica papaya HOM05D004154 ORTHO05D004988 3.3e-18 96.3 184 47.8
Lj4g0021447 Lotus japonicus HOM05D004154 ORTHO05D004988 3.3e-18 96.3 184 40.2
PSO384G3063 Papaver somniferum HOM05D004154 ORTHO05D004988 3.3e-18 96.3 187 44.9
Zm00001eb238060 Zea mays HOM05D004154 ORTHO05D004988 5.6e-18 95.5 137 54.7
Duzib205G2047 Durio zibethinus HOM05D004154 ORTHO05D004988 7.3e-18 95.1 168 51.8
Atru.chr2.763 Acer truncatum HOM05D004154 ORTHO05D004988 2.1e-17 93.6 103 59.2
Thecc.03G293700 Theobroma cacao HOM05D004154 ORTHO05D004988 2.1e-17 93.6 180 42.8
FAN08G1247 Fragaria x ananassa HOM05D004154 ORTHO05D004988 2.8e-17 93.2 169 47.9
MD14G1121900 Malus domestica HOM05D004154 ORTHO05D004988 3.6e-17 92.8 110 50.0
CANSAT21G2399 Cannabis sativa HOM05D004154 ORTHO05D004988 6.2e-17 92.0 137 55.5
CiPaw.11G123500 Carya illinoinensis HOM05D004154 ORTHO05D004988 6.2e-17 92.0 185 46.5
ECA234G2690 Erigeron canadensis HOM05D004154 ORTHO05D004988 6.2e-17 92.0 185 48.1
unitig_32.g11609 Utricularia gibba HOM05D004154 ORTHO05D004988 8.1e-17 91.7 143 53.1
GSVIVG01019504001 Vitis vinifera HOM05D004154 ORTHO05D004988 2.3e-16 90.1 184 42.9
CSS0026293 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 3.1e-16 89.7 51 94.1
Lsat_1_v5_gn_3_10260 Lactuca sativa HOM05D004154 ORTHO05D004988 3.1e-16 89.7 170 47.1
THA.LOC104806434 Tarenaya hassleriana HOM05D004154 ORTHO05D004988 5.2e-16 89.0 167 49.1
Carub.0007s1732 Capsella rubella HOM05D004154 ORTHO05D004988 6.8e-16 88.6 144 46.5
Nitab4.5_0000223g0250 Nicotiana tabacum HOM05D004154 ORTHO05D004988 6.8e-16 88.6 184 45.7
AT4G23800 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 8.9e-16 88.2 151 49.7
FAN13G2696 Fragaria x ananassa HOM05D004154 ORTHO05D004988 8.9e-16 88.2 173 48.0
CARHR231190 Cardamine hirsuta HOM05D004154 ORTHO05D004988 1.5e-15 87.4 155 38.7
Sopen08g030360 Solanum pennellii HOM05D004154 ORTHO05D004988 1.5e-15 87.4 170 48.2
Atru.chr9.2030 Acer truncatum HOM05D004154 ORTHO05D004988 5.8e-15 85.5 167 45.5
AL7G29550 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 5.8e-15 85.5 151 48.3
C01p19010 Brassica napus HOM05D004154 ORTHO05D004988 5.8e-15 85.5 182 44.5
BolC1t01827H Brassica oleracea HOM05D004154 ORTHO05D004988 5.8e-15 85.5 182 44.5
PGSC0003DMG400012298 Solanum tuberosum HOM05D004154 ORTHO05D004988 5.8e-15 85.5 184 43.5
A01p15110 Brassica napus HOM05D004154 ORTHO05D004988 7.5e-15 85.1 157 42.0
A09p28160 Brassica napus HOM05D004154 ORTHO05D004988 7.5e-15 85.1 154 49.4
Haze_08653 Corylus avellana HOM05D004154 ORTHO05D004988 7.5e-15 85.1 169 48.5
Glyma.01G060600 Glycine max HOM05D004154 ORTHO05D004988 7.5e-15 85.1 143 44.1
PGSC0003DMG400012086 Solanum tuberosum HOM05D004154 ORTHO05D004988 7.5e-15 85.1 145 42.8
BraA09t38379Z Brassica rapa HOM05D004154 ORTHO05D004988 9.8e-15 84.7 154 49.4
BraA01t01449Z Brassica rapa HOM05D004154 ORTHO05D004988 1.3e-14 84.3 151 43.0
Sc07g0009970 Simmondsia chinensis HOM05D004154 ORTHO05D004988 1.3e-14 84.3 102 55.9
Sp6g06370 Schrenkiella parvula HOM05D004154 ORTHO05D004988 1.7e-14 84.0 145 51.0
Sp7g21760 Schrenkiella parvula HOM05D004154 ORTHO05D004988 1.7e-14 84.0 181 39.8
TWI60G1238 Tripterygium wilfordii HOM05D004154 ORTHO05D004988 1.7e-14 84.0 184 37.5
BcaC09g50947 Brassica carinata HOM05D004154 ORTHO05D004988 2.2e-14 83.6 151 43.0
MELO3C016306.2 Cucumis melo HOM05D004154 ORTHO05D004988 2.2e-14 83.6 196 43.4
BcaNung01086 Brassica carinata HOM05D004154 ORTHO05D004988 2.9e-14 83.2 151 43.0
Thhalv10028648m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 2.9e-14 83.2 182 46.2
AT4G11080 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 6.4e-14 82.0 145 49.7
CSS0023347 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 8.3e-14 81.6 90 58.9
TPR.G3381 Trifolium pratense HOM05D004154 ORTHO05D004988 1.4e-13 80.9 185 44.3
CAN.G532.100 Capsicum annuum HOM05D004154 ORTHO05D004988 1.9e-13 80.5 106 51.9
CsaV3_4G006440 Cucumis sativus L. HOM05D004154 ORTHO05D004988 2.4e-13 80.1 196 42.3
RcHm_v2.0_Chr7g0195371 Rosa chinensis HOM05D004154 ORTHO05D004988 2.4e-13 80.1 136 50.7
BcaC04g21100 Brassica carinata HOM05D004154 ORTHO05D004988 3.2e-13 79.7 154 48.1
C09p35690 Brassica napus HOM05D004154 ORTHO05D004988 3.2e-13 79.7 154 48.1
BolC9t56405H Brassica oleracea HOM05D004154 ORTHO05D004988 3.2e-13 79.7 154 48.1
Solyc08g082070.3 Solanum lycopersicum HOM05D004154 ORTHO05D004988 3.2e-13 79.7 170 46.5
AL6G45220 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 4.1e-13 79.3 145 48.3
Migut.A00676 Erythranthe guttata HOM05D004154 ORTHO05D004988 4.1e-13 79.3 137 52.6
Aa31LG6G7020 Aethionema arabicum HOM05D004154 ORTHO05D004988 5.4e-13 79.0 150 44.7
CARHR255520 Cardamine hirsuta HOM05D004154 ORTHO05D004988 5.4e-13 79.0 145 49.7
Carub.0006s2985 Capsella rubella HOM05D004154 ORTHO05D004988 9.2e-13 78.2 145 46.9
Eucgr.E00847 Eucalyptus grandis HOM05D004154 ORTHO05D004988 1.6e-12 77.4 179 39.1
Thhalv10025168m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 2.1e-12 77.0 186 38.2
Aa31LG5G23780 Aethionema arabicum HOM05D004154 ORTHO05D004988 2.7e-12 76.6 152 48.0
EL10Ac5g12892 Beta vulgaris HOM05D004154 ORTHO05D004988 2.7e-12 76.6 134 42.5
DCAR_027717 Daucus carota HOM05D004154 ORTHO05D004988 2.7e-12 76.6 146 41.1
PGR042G2687 Punica granatum HOM05D004154 ORTHO05D004988 2.7e-12 76.6 183 37.7
CSS0027886 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.7e-11 73.9 97 52.6
Pp3c11_8530 Physcomitrium patens HOM05D004154 ORTHO05D004988 1.7e-11 73.9 169 42.0
MD06G1103000 Malus domestica HOM05D004154 ORTHO05D004988 6.6e-11 72.0 183 43.7
CDE04G1588 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 8.6e-11 71.6 98 40.8
Atru.chr9.2037 Acer truncatum HOM05D004154 ORTHO05D001448 7.3e-10 68.6 81 56.8
Pp3c7_20570 Physcomitrium patens HOM05D004154 ORTHO05D004988 6.2e-09 65.5 106 40.6
Lj8A210T88 Lonicera japonica HOM05D004154 ORTHO05D004988 1.8e-08 63.9 183 42.1
AagrBONN_evm.TU.Sc2ySwM_117.3685 Anthoceros agrestis HOM05D004154 ORTHO05D004988 3.1e-08 63.2 146 39.0
Nitab4.5_0010205g0030 Nicotiana tabacum HOM05D004154 ORTHO05D004988 3.1e-08 63.2 174 43.7
Ciclev10023918m.g Citrus clementina HOM05D004154 ORTHO05D004988 2.0e-07 60.5 174 42.0
Hund11402 Selenicereus undatus HOM05D004154 ORTHO05D004988 2.0e-07 60.5 171 42.7
SEGI_25080 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 2.2e-06 57.0 109 37.6
Actinidia12320 Actinidia chinensis HOM05D004154 ORTHO05D004988 4.9e-06 55.8 57 54.4
Ca_12802_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 6.4e-06 55.5 80 43.8


User provided reference genes

Program Settings