Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1437.2 716 100.0
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1424.5 716 99.0
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1208.7 720 82.8
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1179.5 722 80.6
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1166.4 718 79.4
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1166.0 723 79.8
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 0.0e+00 1138.3 725 76.0
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1133.6 713 77.0
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1132.5 717 77.4
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1131.7 723 77.3
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 0.0e+00 1130.9 706 81.2
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 0.0e+00 1125.9 722 76.6
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1124.0 717 77.8
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 0.0e+00 1122.5 725 75.6
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 0.0e+00 1122.1 710 76.8
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1118.2 716 76.7
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 0.0e+00 1116.7 716 76.5
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 0.0e+00 1112.8 716 76.7
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1111.3 718 76.9
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 0.0e+00 1107.4 718 76.7
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 0.0e+00 1101.7 725 76.1
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 0.0e+00 1100.5 727 74.7
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1099.0 717 75.5
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1092.0 727 74.3
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1092.0 724 74.4
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 0.0e+00 1090.5 717 74.3
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1087.8 724 73.9
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 0.0e+00 1087.0 720 73.8
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1086.6 718 75.8
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 0.0e+00 1086.6 721 73.9
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 0.0e+00 1086.2 719 73.6
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 0.0e+00 1083.2 721 73.6
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 0.0e+00 1081.6 714 73.1
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 0.0e+00 1080.9 984 61.4
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 0.0e+00 1080.1 720 73.9
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 0.0e+00 1080.1 723 73.4
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 0.0e+00 1080.1 715 73.3
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 0.0e+00 1079.7 659 80.3
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1078.2 716 77.9
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1076.2 720 73.8
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 4.9e-312 1074.7 716 72.9
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 4.9e-312 1074.3 716 72.8
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 9.8e-312 1072.8 720 73.8
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 9.8e-312 1072.8 722 73.5
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.7e-310 1068.9 717 72.7
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 3.7e-310 1067.8 713 73.9
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.1e-309 1066.2 716 73.5
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.4e-309 1065.8 707 73.1
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.7e-307 1058.9 711 73.3
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 3.6e-305 1051.2 719 69.8
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 1.5e-303 1045.8 716 70.0
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 2.0e-303 1045.4 723 71.6
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 2.0e-303 1045.4 717 71.8
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 2.8e-302 1041.6 720 72.2
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 5.4e-301 1037.3 716 69.4
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 2.0e-300 1035.4 715 69.5
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 4.5e-300 1034.2 719 68.8
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 5.9e-300 1033.9 736 70.1
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.0e-299 1033.1 724 72.2
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 1.5e-298 1029.2 722 69.3
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.6e-297 1025.8 716 69.1
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 8.0e-297 1023.5 732 67.3
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.0e-296 1023.1 720 70.6
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.4e-296 1022.7 723 71.0
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 5.2e-296 1020.8 652 75.6
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 6.8e-296 1020.4 721 67.8
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.5e-295 1019.2 721 67.8
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 1.5e-295 1019.2 717 68.1
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 2.0e-295 1018.8 721 68.0
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 2.0e-295 1018.8 730 71.1
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 2.8e-294 1015.0 721 67.3
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 4.9e-294 1014.2 723 68.6
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.8e-293 1012.3 719 69.0
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 2.4e-293 1011.9 634 77.9
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 4.1e-293 1011.1 728 69.4
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.5e-287 992.6 719 68.4
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 4.1e-285 984.6 728 66.6
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 9.5e-282 973.4 584 81.5
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.2e-281 973.0 542 87.5
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.0e-281 970.3 724 66.2
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.5e-279 966.1 647 72.3
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 2.2e-278 962.2 709 68.3
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 3.5e-276 954.9 720 66.9
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 6.6e-275 950.7 726 65.6
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 9.5e-274 946.8 653 70.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.2e-272 941.0 978 57.1
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 3.0e-267 925.2 724 63.0
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 3.3e-266 921.8 629 72.5
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.6e-266 921.0 589 74.5
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 9.6e-266 920.2 625 72.6
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.9e-261 906.0 734 61.3
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 1.6e-260 902.9 730 61.1
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 7.3e-258 894.0 871 55.1
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 2.4e-253 879.0 568 74.1
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.2e-253 878.6 724 62.4
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 4.1e-224 781.9 721 58.7
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 8.2e-201 704.5 453 75.9
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 4.1e-192 675.6 483 69.2
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 2.8e-185 652.9 730 47.5
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.2e-170 604.4 447 69.6
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 4.6e-167 592.4 701 44.5
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.1e-163 581.3 363 76.6
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 7.6e-154 548.5 639 45.1
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 7.6e-138 495.4 380 61.6
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 1.1e-107 395.2 275 66.9
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.7e-103 380.6 226 83.6
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 7.9e-103 379.0 254 74.4
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 4.5e-90 336.7 266 62.0
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.7e-84 318.2 291 58.1
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.7e-76 290.4 167 89.2
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 3.8e-73 280.4 292 52.1
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 4.0e-62 243.8 149 73.2
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 7.5e-45 186.4 154 64.3
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.5e-45 186.4 280 39.3
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 4.7e-39 167.2 280 36.8
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.2e-38 163.7 209 42.1
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.7e-33 148.7 130 62.3
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.9e-32 145.2 103 72.8
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 3.6e-31 141.0 107 70.1
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.0e-30 137.5 112 57.1
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 3.4e-29 134.4 87 72.4
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.2e-28 131.7 155 42.6
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 2.9e-28 131.3 82 75.6
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 4.2e-27 127.5 82 74.4
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-27 127.5 169 40.2
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.1e-26 125.2 98 60.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 2.1e-23 115.2 83 63.9
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 1.8e-22 112.1 72 77.8
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 5.3e-22 110.5 109 54.1
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 7.6e-21 106.7 75 76.0
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 6.4e-20 103.6 61 77.0
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.4e-19 102.4 66 72.7
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 3.2e-19 101.3 69 68.1
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 5.4e-19 100.5 109 51.4
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.6e-18 99.0 109 50.5
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 6.0e-18 97.1 79 64.6
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 3.0e-17 94.7 129 43.4
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.5e-16 91.7 55 83.6
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 7.4e-16 90.1 77 55.8
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.1e-15 88.6 65 69.2
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-15 88.2 254 29.5
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 4.8e-15 87.4 618 21.7
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 6.9e-14 83.6 57 70.2
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.2e-13 82.8 171 29.8
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 4.5e-13 80.9 57 68.4
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 4.5e-13 80.9 57 68.4
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 7.6e-13 80.1 55 65.5
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.7e-12 79.0 70 57.1
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 8.4e-12 76.6 57 64.9
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 9.3e-11 73.2 48 75.0
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.6e-10 72.4 53 67.9
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 7.9e-10 70.1 335 20.0
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 6.7e-09 67.0 56 60.7
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 1.1e-08 66.2 72 54.2
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 1.4e-06 59.3 51 60.8


User provided reference genes

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