Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.3e-24 115.5 59 100.0
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.9e-10 68.6 42 78.6
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 2.5e-10 68.2 42 81.0
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 2.5e-10 68.2 42 78.6
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 2.5e-10 68.2 42 76.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.5e-10 68.2 42 81.0
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 3.2e-10 67.8 42 78.6
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.2e-10 67.4 42 78.6
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.2e-10 67.4 42 78.6
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 4.2e-10 67.4 41 80.5
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 5.5e-10 67.0 42 78.6
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 5.5e-10 67.0 42 78.6
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 5.5e-10 67.0 42 78.6
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 7.2e-10 66.6 42 78.6
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 7.2e-10 66.6 42 78.6
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 9.4e-10 66.2 42 73.8
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 9.4e-10 66.2 42 78.6
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 9.4e-10 66.2 42 78.6
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 9.4e-10 66.2 41 80.5
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 73.8
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.2e-09 65.9 42 76.2
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.6e-09 65.5 42 76.2
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.6e-09 65.5 42 76.2
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.6e-09 65.5 42 76.2
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.6e-09 65.5 42 76.2
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.6e-09 65.5 42 76.2
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.6e-09 65.5 42 76.2
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.1e-09 65.1 42 76.2
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 2.1e-09 65.1 42 73.8
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 2.1e-09 65.1 42 73.8
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.1e-09 65.1 42 73.8
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 2.1e-09 65.1 42 76.2
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.1e-09 65.1 40 82.5
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 2.7e-09 64.7 41 78.0
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 2.7e-09 64.7 41 78.0
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 2.7e-09 64.7 41 78.0
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 2.7e-09 64.7 41 78.0
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 2.7e-09 64.7 41 78.0
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 2.7e-09 64.7 41 78.0
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.7e-09 64.7 41 78.0
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.7e-09 64.7 41 78.0
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 2.7e-09 64.7 41 78.0
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.7e-09 64.7 42 76.2
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 3.6e-09 64.3 42 73.8
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 3.6e-09 64.3 42 76.2
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 3.6e-09 64.3 42 73.8
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 3.6e-09 64.3 42 76.2
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 3.6e-09 64.3 42 73.8
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 3.6e-09 64.3 42 73.8
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 3.6e-09 64.3 42 71.4
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 4.7e-09 63.9 42 71.4
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 4.7e-09 63.9 42 71.4
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 4.7e-09 63.9 42 71.4
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 4.7e-09 63.9 42 73.8
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 6.1e-09 63.5 41 75.6
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 6.1e-09 63.5 41 75.6
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 6.1e-09 63.5 41 75.6
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 6.1e-09 63.5 41 75.6
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 6.1e-09 63.5 42 73.8
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 6.1e-09 63.5 42 71.4
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 6.1e-09 63.5 42 69.0
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 6.1e-09 63.5 41 75.6
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 6.1e-09 63.5 41 75.6
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 7.9e-09 63.2 39 84.6
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 7.9e-09 63.2 41 73.2
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.0e-08 62.8 42 71.4
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.0e-08 62.8 42 69.0
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.0e-08 62.8 42 69.0
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.0e-08 62.8 42 69.0
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.0e-08 62.8 42 69.0
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.0e-08 62.8 42 66.7
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.4e-08 62.4 42 73.8
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.4e-08 62.4 42 69.0
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.8e-08 62.0 42 73.8
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.8e-08 62.0 42 73.8
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 1.8e-08 62.0 41 73.2
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.8e-08 62.0 42 73.8
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.8e-08 62.0 42 73.8
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.8e-08 62.0 42 73.8
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.8e-08 62.0 42 76.2
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.8e-08 62.0 42 69.0
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 2.3e-08 61.6 41 73.2
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 2.3e-08 61.6 42 71.4
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 2.3e-08 61.6 42 69.0
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.3e-08 61.6 42 69.0
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 3.0e-08 61.2 42 69.0
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.0e-08 61.2 42 69.0
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.0e-08 61.2 42 69.0
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.0e-08 61.2 42 71.4
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 3.0e-08 61.2 39 79.5
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 3.0e-08 61.2 42 69.0
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.0e-08 61.2 42 73.8
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 3.9e-08 60.8 42 69.0
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 3.9e-08 60.8 41 70.7
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 3.9e-08 60.8 41 73.2
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 3.9e-08 60.8 41 73.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 3.9e-08 60.8 52 59.6
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 3.9e-08 60.8 43 67.4
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 5.1e-08 60.5 42 71.4
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.1e-08 60.5 42 66.7
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.1e-08 60.5 42 66.7
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 6.7e-08 60.1 41 65.9
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 8.8e-08 59.7 39 76.9
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 8.8e-08 59.7 42 73.8
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 8.8e-08 59.7 41 70.7
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 1.1e-07 59.3 42 64.3
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.0e-07 58.5 42 66.7
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 3.3e-07 57.8 40 67.5
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.3e-07 57.8 42 66.7
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 4.4e-07 57.4 42 66.7
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 4.4e-07 57.4 42 69.0
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 5.7e-07 57.0 42 69.0
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 5.7e-07 57.0 50 56.0
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 5.7e-07 57.0 42 66.7
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 7.4e-07 56.6 41 70.7
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 9.7e-07 56.2 38 71.1
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 9.7e-07 56.2 41 61.0
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.2e-06 55.1 42 61.9
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 2.2e-06 55.1 42 64.3
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.7e-06 54.3 42 59.5


User provided reference genes

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