Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.8e-99 365.9 183 100.0
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.3e-99 365.5 183 99.5
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 88.0
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 86.3
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 87.4
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 86.9
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 85.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 86.3
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.1e-85 320.1 182 86.3
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 84.2
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 85.8
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 85.2
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 84.2
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 86.3
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 86.3
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 5.5e-85 317.8 181 85.6
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 5.5e-85 317.8 181 85.1
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 85.2
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 84.7
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 84.2
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 84.7
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 84.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.1
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.1
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 84.2
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 85.2
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 84.2
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 84.7
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.4e-83 313.2 190 81.1
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 83.6
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 83.6
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 84.2
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 83.6
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 83.6
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 81.4
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 82.5
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.5
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.5
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.5
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 83.1
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.0
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.0
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 83.6
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 80.3
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 81.4
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 82.0
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 82.5
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 80.3
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 80.3
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 6.3e-81 304.3 182 79.1
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 80.3
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 80.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 79.8
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.8e-80 302.8 183 80.9
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 2.4e-80 302.4 183 80.3
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 2.4e-80 302.4 183 80.3
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 80.3
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 78.1
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 80.7
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 79.2
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.2e-79 300.1 182 77.5
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 79.2
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 79.2
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 78.7
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 78.7
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 78.7
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 77.6
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 4.5e-79 298.1 182 76.9
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 77.6
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 77.6
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 78.1
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.0e-78 297.0 182 80.8
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.3e-78 296.6 182 79.7
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 78.1
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 78.1
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.8e-78 295.0 179 80.4
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 5.0e-78 294.7 183 78.1
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 76.5
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 6.6e-78 294.3 181 79.0
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 74.9
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.5e-77 293.1 184 77.7
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 2.5e-77 292.4 183 74.9
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.3e-77 291.6 179 78.8
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 77.9
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 77.3
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.3e-77 291.6 183 78.1
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 7.3e-77 290.8 179 78.2
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 9.5e-77 290.4 183 78.1
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.8e-76 288.9 183 79.2
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 3.6e-76 288.5 181 77.3
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 3.6e-76 288.5 181 77.3
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 3.6e-76 288.5 181 77.3
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 4.7e-76 288.1 184 74.5
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 6.1e-76 287.7 181 77.3
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 6.1e-76 287.7 181 77.3
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 8.0e-76 287.3 181 76.2
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.0e-75 287.0 181 75.7
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.4e-75 286.6 183 78.7
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.8e-75 286.2 228 66.2
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 2.3e-75 285.8 181 75.1
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.3e-75 285.8 184 73.9
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.3e-75 285.8 179 77.1
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 75.4
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 4.0e-75 285.0 179 77.7
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 4.0e-75 285.0 184 76.6
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 5.2e-75 284.6 181 75.1
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.5e-74 283.1 179 77.7
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.0e-74 282.7 183 76.5
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.0e-74 282.7 184 73.9
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 9.8e-74 280.4 179 76.0
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.8e-72 276.2 185 73.5
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.4e-72 275.8 183 70.5
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 2.0e-71 272.7 182 72.0
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 2.7e-71 272.3 219 64.8
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.0e-70 270.4 184 69.0
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.9e-70 268.5 183 69.9
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.9e-69 266.2 152 84.2
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 2.5e-69 265.8 183 68.9
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 6.8e-67 257.7 183 73.2
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 4.4e-66 255.0 183 72.1
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 7.5e-66 254.2 155 76.1
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 7.5e-66 254.2 155 80.0
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 4.9e-65 251.5 152 80.3
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 5.4e-64 248.1 181 64.1
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.1e-61 240.4 181 68.5
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.5e-61 239.2 188 68.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 8.1e-60 234.2 181 65.2
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.5e-58 229.9 136 80.1
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 4.4e-58 228.4 183 66.1
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 3.0e-54 215.7 138 73.2
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.5e-53 212.6 183 63.4
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 2.4e-51 206.1 150 69.3
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 4.4e-50 201.8 175 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.3e-49 200.3 152 65.1
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.4e-48 194.9 179 60.3
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 5.1e-46 188.3 158 58.9
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 4.3e-45 185.3 123 74.0
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 9.6e-45 184.1 102 87.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.6e-44 183.3 100 88.0
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.8e-44 182.6 154 59.1
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 7.6e-42 174.5 100 85.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 9.9e-42 174.1 186 47.3
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-41 173.3 99 83.8
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 2.1e-39 166.4 158 54.4
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 2.1e-39 166.4 146 56.8
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 1.9e-37 159.8 106 72.6
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 8.1e-36 154.5 134 60.4
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 4.5e-34 148.7 105 68.6
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 1.9e-32 143.3 81 85.2
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.9e-29 133.3 99 64.6
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 9.6e-29 131.0 78 80.8
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.2e-26 124.0 81 71.6
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 9.9e-26 120.9 106 57.5
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.7e-25 120.2 101 61.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.4e-19 100.5 68 64.7
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 4.2e-16 89.0 106 50.9
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.6e-15 87.0 52 78.8
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.3e-12 77.4 127 42.5
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.4e-06 57.4 37 70.3
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 2.3e-06 56.6 81 43.2
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 3.0e-06 56.2 87 39.1
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 3.9e-06 55.8 130 26.9
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 8.8e-06 54.7 90 36.7


User provided reference genes

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