Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.5e-72 274.2 142 100.0
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.9e-58 227.6 139 83.5
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.2e-57 225.7 137 83.9
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.4e-56 223.0 137 81.0
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.9e-56 222.6 137 82.5
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.9e-56 222.6 138 82.6
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.9e-56 222.6 137 81.8
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 5.5e-56 221.1 136 79.4
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 9.3e-56 220.3 139 82.7
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.6e-55 218.4 137 82.5
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 3.6e-55 218.4 136 80.1
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 6.1e-55 217.6 136 77.9
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 7.9e-55 217.2 137 82.5
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 7.9e-55 217.2 138 82.6
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.3e-54 216.5 138 79.7
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 1.3e-54 216.5 136 82.4
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 3.9e-54 214.9 137 78.8
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 5.1e-54 214.5 142 80.3
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 5.1e-54 214.5 137 78.8
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.7e-54 214.2 132 82.6
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 6.7e-54 214.2 136 77.9
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.1e-53 213.4 137 77.4
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.5e-53 213.0 137 77.4
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.5e-53 213.0 136 81.6
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.9e-53 212.6 138 79.7
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.9e-53 212.6 137 79.6
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.5e-53 212.2 138 79.7
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.5e-53 212.2 138 79.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 2.5e-53 212.2 138 78.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 3.3e-53 211.8 137 78.8
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 4.3e-53 211.5 137 78.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.3e-53 211.5 140 79.3
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 5.7e-53 211.1 137 79.6
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 5.7e-53 211.1 137 77.4
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.4e-53 210.7 139 77.0
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 9.7e-53 210.3 136 79.4
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 9.7e-53 210.3 136 79.4
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 9.7e-53 210.3 136 77.2
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.6e-52 209.5 136 80.1
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.6e-52 209.5 137 79.6
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.6e-52 209.5 137 78.1
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.6e-52 209.5 137 80.3
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.2e-52 209.1 137 80.3
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.2e-52 209.1 137 80.3
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 2.8e-52 208.8 139 79.1
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 2.8e-52 208.8 137 83.2
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.8e-52 208.8 136 75.7
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 8.2e-52 207.2 137 78.1
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 8.2e-52 207.2 131 77.9
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 8.2e-52 207.2 137 76.6
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.1e-51 204.9 136 75.7
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 5.3e-51 204.5 136 76.5
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.9e-51 204.1 137 76.6
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 6.9e-51 204.1 137 74.5
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 9.1e-51 203.8 136 77.2
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 9.1e-51 203.8 134 78.4
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.2e-50 203.4 138 75.4
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.2e-50 203.4 138 75.4
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.2e-50 203.4 136 80.1
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.2e-50 203.4 136 75.7
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.5e-50 203.0 138 78.3
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-50 203.0 137 75.9
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-50 203.0 137 75.9
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.0e-50 202.6 137 74.5
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.0e-50 202.6 137 74.5
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 2.0e-50 202.6 136 77.2
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.0e-50 202.6 136 75.0
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.6e-50 202.2 137 73.7
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 3.4e-50 201.8 139 73.4
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 3.4e-50 201.8 139 73.4
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.4e-50 201.8 137 75.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 3.4e-50 201.8 136 75.0
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 3.4e-50 201.8 136 75.7
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 4.5e-50 201.4 139 73.4
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 4.5e-50 201.4 139 74.1
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 4.5e-50 201.4 139 74.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 5.9e-50 201.1 137 73.7
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 5.9e-50 201.1 137 73.7
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 5.9e-50 201.1 137 73.7
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 5.9e-50 201.1 137 73.7
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 5.9e-50 201.1 137 73.7
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 7.7e-50 200.7 138 73.9
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 7.7e-50 200.7 138 73.9
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 7.7e-50 200.7 138 73.9
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 7.7e-50 200.7 139 76.3
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 7.7e-50 200.7 137 74.5
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.0e-49 200.3 138 75.4
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 73.4
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 137 75.9
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.7e-49 199.5 138 73.2
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.7e-49 199.5 138 74.6
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 2.2e-49 199.1 139 71.9
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.2e-49 199.1 137 73.0
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.2e-49 199.1 139 71.9
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.9e-49 198.7 139 71.9
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.0e-49 198.0 143 74.8
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 5.0e-49 198.0 137 75.2
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 5.0e-49 198.0 139 71.2
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 6.5e-49 197.6 136 76.5
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 6.5e-49 197.6 139 71.9
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 8.5e-49 197.2 138 73.2
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 8.5e-49 197.2 152 68.4
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 8.5e-49 197.2 137 73.0
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.1e-48 196.8 138 73.9
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.9e-48 196.1 139 75.5
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.9e-48 196.1 138 73.9
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 2.5e-48 195.7 138 71.7
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.2e-48 194.9 138 73.2
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 5.5e-48 194.5 138 71.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 5.5e-48 194.5 138 73.9
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 9.4e-48 193.7 138 75.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.6e-47 193.0 131 74.8
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.1e-47 192.6 137 74.5
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.7e-47 192.2 138 72.5
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 71.1
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 3.6e-47 191.8 138 73.2
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 72.5
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.9e-46 188.3 140 68.6
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.1e-46 188.0 136 69.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 5.1e-46 188.0 140 69.3
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 6.7e-46 187.6 133 74.4
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 1.1e-45 186.8 132 72.0
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 1.5e-45 186.4 136 69.1
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 2.0e-45 186.0 136 72.1
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.6e-45 185.7 136 67.6
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 2.6e-45 185.7 141 75.2
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 7.4e-45 184.1 138 71.7
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.7e-44 183.0 137 70.8
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 6.3e-44 181.0 136 66.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.1e-43 180.3 138 68.8
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 5.3e-43 177.9 140 67.9
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 5.3e-43 177.9 140 67.9
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 6.9e-43 177.6 132 70.5
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 7.7e-42 174.1 129 70.5
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 2.9e-41 172.2 138 68.1
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 7.2e-40 167.5 156 61.5
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 9.4e-40 167.2 137 61.3
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.2e-39 166.8 150 66.0
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.6e-39 166.4 117 74.4
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.0e-38 162.2 108 72.2
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 2.6e-37 159.1 89 87.6
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.2e-36 154.1 137 58.4
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.1e-35 153.7 86 87.2
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.6e-34 149.8 135 59.3
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.5e-34 148.7 115 68.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 8.5e-33 144.1 115 63.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.1e-32 143.7 116 61.2
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 1.2e-31 140.2 91 82.4
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.2e-31 140.2 137 59.1
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.6e-31 139.8 140 57.9
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.6e-29 132.5 138 53.6
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.8e-28 129.0 144 52.8
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.7e-28 128.6 119 56.3
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 6.3e-28 127.9 89 75.3
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.4e-27 125.9 120 55.8
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 9.1e-27 124.0 89 68.5
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.2e-26 123.6 148 49.3
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.0e-26 122.9 145 51.0
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 9.8e-21 104.0 53 90.6
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.7e-20 103.2 68 67.6
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.1e-19 100.5 129 41.9
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.8e-19 99.8 137 46.7
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 1.1e-16 90.5 79 63.3
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 3.3e-16 89.0 80 57.5
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.0e-14 82.4 76 56.6
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 4.7e-07 58.5 133 36.8


User provided reference genes

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