Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016001 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.0e-102 376.7 183 100.0
CSS0038211 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 3.6e-92 341.7 187 92.0
CSS0002523 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.2e-65 252.7 165 79.4
CSS0003260 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 8.1e-60 234.2 175 72.0
CSS0013186 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.0e-59 231.9 165 75.2
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.0e-59 231.9 159 75.5
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.0e-59 231.9 159 75.5
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 7.1e-56 221.1 159 71.1
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 1.6e-55 219.9 159 70.4
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.7e-54 216.5 159 69.2
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 6.6e-54 214.5 159 68.6
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 8.6e-54 214.2 159 68.6
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 3.3e-53 212.2 159 68.6
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 3.3e-53 212.2 159 68.6
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 7.3e-53 211.1 159 67.9
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 7.3e-53 211.1 161 67.7
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 9.5e-53 210.7 159 69.2
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.6e-52 209.9 159 67.9
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 1.6e-52 209.9 159 67.9
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 2.1e-52 209.5 159 67.3
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 2.1e-52 209.5 159 66.0
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 3.6e-52 208.8 159 67.9
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 3.6e-52 208.8 159 67.9
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.6e-52 208.8 159 67.3
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.6e-52 208.8 159 67.3
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 4.7e-52 208.4 159 66.7
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 6.2e-52 208.0 159 66.0
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 6.2e-52 208.0 159 66.7
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 1.1e-51 207.2 159 67.3
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.1e-51 207.2 159 66.0
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 1.1e-51 207.2 159 66.0
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 1.1e-51 207.2 159 66.7
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 65.4
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 65.4
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 65.4
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 65.4
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 65.4
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 66.7
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 66.0
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 66.7
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 1.8e-51 206.5 159 66.0
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 3.1e-51 205.7 159 64.8
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 3.1e-51 205.7 159 67.3
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 3.1e-51 205.7 159 64.8
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 4.0e-51 205.3 159 66.0
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 4.0e-51 205.3 159 66.7
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 4.0e-51 205.3 159 66.0
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 4.0e-51 205.3 171 62.6
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 5.2e-51 204.9 159 64.8
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 5.2e-51 204.9 159 64.8
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 6.8e-51 204.5 159 63.5
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 6.8e-51 204.5 159 64.8
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 6.8e-51 204.5 159 65.4
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 6.8e-51 204.5 159 65.4
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 6.8e-51 204.5 159 65.4
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 6.8e-51 204.5 159 66.7
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 6.8e-51 204.5 159 64.8
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 8.9e-51 204.1 159 64.2
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 8.9e-51 204.1 159 64.2
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 8.9e-51 204.1 159 64.2
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 8.9e-51 204.1 159 66.0
Actinidia06739 Actinidia chinensis HOM05D003507 ORTHO05D004324 1.5e-50 203.4 154 67.5
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 1.5e-50 203.4 159 64.2
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 1.5e-50 203.4 159 66.0
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 2.0e-50 203.0 172 61.6
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 2.0e-50 203.0 159 63.5
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 2.0e-50 203.0 159 65.4
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.0e-50 203.0 159 64.8
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 2.6e-50 202.6 159 64.8
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 2.6e-50 202.6 159 64.8
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 4.4e-50 201.8 159 64.2
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 4.4e-50 201.8 159 64.2
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 4.4e-50 201.8 159 64.8
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 4.4e-50 201.8 159 64.2
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 4.4e-50 201.8 159 64.8
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 4.4e-50 201.8 159 66.0
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 5.8e-50 201.4 159 65.4
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 5.8e-50 201.4 159 64.8
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 5.8e-50 201.4 159 64.8
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 5.8e-50 201.4 159 64.8
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 1.3e-49 200.3 157 64.3
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 1.3e-49 200.3 159 64.2
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 1.7e-49 199.9 159 64.2
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 2.2e-49 199.5 159 62.9
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 2.2e-49 199.5 159 62.9
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 2.2e-49 199.5 159 63.5
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 64.2
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 64.2
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 64.2
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 64.2
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 63.5
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 64.8
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 64.2
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 64.8
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 3.8e-49 198.7 161 62.1
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 3.8e-49 198.7 161 62.1
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 3.8e-49 198.7 159 63.5
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 3.8e-49 198.7 159 64.2
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 4.9e-49 198.4 159 61.6
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 4.9e-49 198.4 159 62.9
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 4.9e-49 198.4 159 64.2
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 4.9e-49 198.4 159 64.2
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 6.4e-49 198.0 159 64.2
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 6.4e-49 198.0 159 62.9
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 6.4e-49 198.0 159 62.9
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 6.4e-49 198.0 159 63.5
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 8.4e-49 197.6 159 64.8
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 8.4e-49 197.6 159 63.5
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 8.4e-49 197.6 159 64.2
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 8.4e-49 197.6 159 63.5
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.1e-48 197.2 159 62.3
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 1.9e-48 196.4 157 63.7
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 2.4e-48 196.1 159 63.5
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 3.2e-48 195.7 159 62.9
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 3.2e-48 195.7 159 62.9
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 4.1e-48 195.3 161 61.5
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 4.1e-48 195.3 159 62.9
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 4.1e-48 195.3 159 62.3
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 4.1e-48 195.3 159 62.3
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 5.4e-48 194.9 161 61.5
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 5.4e-48 194.9 159 62.3
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 5.4e-48 194.9 159 62.3
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 7.1e-48 194.5 157 63.1
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 7.1e-48 194.5 159 62.9
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 7.1e-48 194.5 159 62.9
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 9.2e-48 194.1 159 61.6
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 1.2e-47 193.7 159 62.3
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 1.2e-47 193.7 159 61.6
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 1.2e-47 193.7 159 61.6
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 1.6e-47 193.4 159 61.6
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 3.5e-47 192.2 157 61.8
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 4.6e-47 191.8 159 61.0
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 4.6e-47 191.8 159 61.6
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 6.0e-47 191.4 160 60.6
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 1.0e-46 190.7 159 61.0
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 1.0e-46 190.7 159 60.4
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 2.3e-46 189.5 159 61.6
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 8.7e-46 187.6 169 56.2
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 1.9e-45 186.4 159 61.0
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 7.3e-45 184.5 159 59.1
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 9.6e-45 184.1 159 60.4
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.2e-44 183.7 160 59.4
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 1.2e-44 183.7 152 62.5
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 2.8e-44 182.6 158 58.9
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 1.8e-43 179.9 159 57.2
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 7.6e-42 174.5 160 55.0
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 8.4e-41 171.0 158 55.1
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.1e-40 170.6 159 55.3
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.1e-40 170.6 159 55.3
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 3.2e-40 169.1 142 60.6
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 4.2e-40 168.7 160 52.5
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 7.1e-40 167.9 160 52.5
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 2.1e-39 166.4 160 52.5
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 5.3e-35 151.8 127 60.6
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 2.8e-28 129.4 115 58.3
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 1.4e-27 127.1 115 58.3
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 4.5e-26 122.1 115 54.8
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 4.6e-23 112.1 158 39.9
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 8.7e-22 107.8 105 54.3
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 6.9e-19 98.2 159 42.8
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 1.2e-18 97.4 155 36.8
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 3.4e-18 95.9 160 33.8
CDE09G1104 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 5.5e-16 88.6 132 46.2
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 9.3e-16 87.8 152 35.5
TPR.G40483 Trifolium pratense HOM05D003507 ORTHO05D004324 1.6e-15 87.0 46 87.0
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 1.3e-14 84.0 115 41.7
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.4e-11 73.9 44 77.3
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 4.2e-08 62.4 54 55.6
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 5.5e-08 62.0 100 38.0


User provided reference genes

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