Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 2667.9 1329 100.0
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 2270.7 1331 85.0
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 2179.8 1328 82.5
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 2084.3 1276 80.5
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1949.5 1330 73.2
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1944.9 1331 73.0
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1906.0 1334 71.3
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1893.2 1328 71.2
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1887.5 1334 70.9
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1887.5 1330 71.7
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1881.7 1334 70.6
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1880.5 1333 71.3
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1872.8 1326 70.7
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1872.1 1326 70.6
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1871.7 1330 70.2
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1871.3 1326 71.0
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1866.7 1327 70.3
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1865.5 1330 70.5
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1862.4 1330 70.2
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1860.5 1333 70.6
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1854.3 1333 70.1
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1852.8 1349 69.2
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1847.0 1334 69.7
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1846.2 1324 70.4
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1845.5 1329 70.1
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1841.2 1331 69.4
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1840.5 1326 68.6
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1836.6 1249 74.3
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1833.2 1329 68.2
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1824.3 1333 69.0
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1823.5 1333 68.9
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1822.8 1333 68.9
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1821.6 1333 68.9
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1820.1 1333 68.3
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1819.3 1331 69.0
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1810.8 1333 68.5
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1810.8 1333 68.6
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1799.3 1334 66.8
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1796.2 1339 67.1
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1795.8 1329 67.3
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1793.1 1326 68.9
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1789.2 1326 67.0
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1786.2 1245 71.7
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1780.8 1341 67.4
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1770.4 1329 66.7
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1770.0 1249 71.3
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1768.4 1281 71.7
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1766.1 1330 66.8
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1753.8 1331 65.7
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1751.9 1343 65.5
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1746.9 1332 66.2
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1739.2 1251 69.5
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1737.6 1331 66.2
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1736.9 1329 65.6
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1736.5 1329 65.1
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1734.9 1329 65.9
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1732.6 1332 66.0
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1724.5 1326 65.2
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1721.8 1331 64.8
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1718.0 1330 64.7
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1715.3 1331 65.4
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1714.9 1332 64.9
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1709.5 1340 64.3
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1705.6 1259 67.4
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1702.6 1258 68.0
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1698.7 1333 64.7
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1677.1 1330 64.1
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1669.4 1328 63.5
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1663.7 1330 64.3
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1644.4 1332 63.7
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1628.6 1101 74.5
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1619.8 1325 62.6
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1607.4 1336 61.5
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1607.4 1191 67.1
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1602.4 1337 61.1
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1597.4 1337 61.0
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1597.4 1333 60.8
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1593.2 1335 60.8
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1592.4 1334 61.0
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1587.0 1334 61.3
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1587.0 1339 60.8
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1586.6 1103 71.3
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1583.2 1333 61.0
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1565.1 1563 54.5
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1550.4 1362 58.8
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1504.2 1336 58.1
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1501.9 1137 66.6
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1494.9 1343 56.3
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1471.4 1118 65.4
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1448.3 1324 55.7
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1415.2 1098 64.6
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1400.6 1329 57.5
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1397.9 1331 55.6
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1394.0 1354 54.7
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1385.5 1155 61.0
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1309.7 870 76.1
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1302.3 951 68.9
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1256.9 906 68.2
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1209.9 1345 51.5
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1208.0 757 80.2
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1154.8 1257 50.4
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 2.3e-257 893.3 1374 39.4
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 6.8e-257 891.7 856 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 3.4e-240 836.3 1203 40.1
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 3.6e-234 816.2 1312 37.7
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 2.3e-228 797.0 1160 40.9
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 1.3e-223 781.2 809 54.3
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 4.8e-162 576.6 1535 30.1
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 4.1e-145 520.4 358 73.7
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 5.9e-144 516.5 377 66.3
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 8.5e-143 512.7 460 59.3
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 3.6e-117 427.6 313 71.9
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 1.3e-90 339.3 1380 27.2
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 9.3e-89 333.2 1552 26.0
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 3.8e-82 311.2 254 59.1
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 6.7e-79 300.4 308 51.9
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.4e-76 292.7 196 79.6
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 2.3e-63 248.8 1350 25.4
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 9.6e-62 243.4 167 78.4
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.1e-57 229.9 207 57.0
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 1.8e-55 222.6 229 52.0
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 8.5e-50 203.8 1359 24.4
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 2.4e-44 185.7 140 71.4
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.4e-41 176.4 131 71.8
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 7.4e-38 164.1 139 61.2
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.6e-35 156.4 289 39.8


User provided reference genes

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