Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 1.9e-116 422.5 218 100.0
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.0e-106 390.2 218 90.8
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.0e-106 390.2 218 89.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.0e-106 388.7 218 89.9
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 4.0e-106 388.3 218 89.0
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 4.0e-106 388.3 218 89.9
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 1.2e-105 386.7 215 90.7
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.2e-105 386.7 217 89.4
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 3.4e-105 385.2 217 89.4
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 5.7e-105 384.4 216 89.8
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 9.8e-105 383.6 218 89.0
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.9e-104 382.1 215 89.3
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 3.7e-104 381.7 218 89.0
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 6.4e-104 380.9 218 87.6
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 6.4e-104 380.9 218 87.6
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.1e-103 380.2 215 89.3
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 1.1e-103 380.2 215 89.3
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 2.4e-103 379.0 215 88.8
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 3.2e-103 378.6 218 87.6
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 2.7e-102 375.6 218 87.6
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 3.5e-102 375.2 218 87.6
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 1.3e-101 373.2 218 86.7
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 2.3e-101 372.5 218 85.8
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 5.0e-101 371.3 211 88.2
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 5.0e-101 371.3 218 87.2
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 8.6e-101 370.5 211 88.6
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 8.6e-101 370.5 218 86.7
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 86.2
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 86.2
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.9e-100 369.4 218 85.8
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.9e-100 369.4 206 91.7
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 2.5e-100 369.0 218 85.3
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 2.5e-100 369.0 218 83.9
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 2.5e-100 369.0 218 83.9
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 4.3e-100 368.2 218 84.9
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 85.3
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 85.3
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 85.3
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 85.3
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 85.3
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 7.3e-100 367.5 218 84.9
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 84.4
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.6e-99 366.3 218 84.9
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 84.4
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 83.0
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 3.6e-99 365.2 206 89.8
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 8.0e-99 364.0 218 84.4
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 1.0e-98 363.6 217 83.4
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.4e-98 363.2 218 83.9
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 84.4
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 83.9
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.8e-98 362.8 220 85.5
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 3.1e-98 362.1 217 83.4
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 5.2e-98 361.3 218 82.6
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 6.8e-98 360.9 218 84.4
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 6.8e-98 360.9 218 83.5
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 8.9e-98 360.5 218 83.0
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 1.2e-97 360.1 218 82.6
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.5e-97 359.8 211 85.3
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.6e-97 359.0 218 82.6
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 3.4e-97 358.6 218 83.9
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 4.4e-97 358.2 218 81.7
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 7.5e-97 357.5 217 82.5
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 7.5e-97 357.5 214 83.6
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.2e-96 355.9 217 82.0
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 3.7e-96 355.1 218 80.3
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 4.9e-96 354.8 218 82.1
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 6.4e-96 354.4 205 89.3
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 8.3e-96 354.0 223 80.7
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.1e-95 353.6 294 67.3
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 4.1e-95 351.7 218 79.8
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 9.2e-95 350.5 221 81.4
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.2e-94 350.1 218 79.4
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.0e-94 349.4 220 81.8
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 2.0e-94 349.4 218 83.5
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.0e-94 349.4 215 84.7
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 2.7e-94 349.0 206 84.5
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 6.0e-94 347.8 206 85.9
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 7.8e-94 347.4 206 85.4
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 7.8e-94 347.4 206 85.4
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.3e-93 346.7 218 79.4
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.7e-93 346.3 218 80.3
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 3.0e-93 345.5 218 78.4
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.9e-92 342.8 203 83.3
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.9e-92 342.8 202 84.2
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 3.3e-92 342.0 219 78.5
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 4.3e-92 341.7 218 79.4
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 5.6e-92 341.3 219 78.5
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 5.6e-92 341.3 219 78.5
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 7.3e-92 340.9 219 78.5
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 7.3e-92 340.9 219 78.5
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 2.1e-91 339.3 218 78.4
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 6.2e-91 337.8 219 78.1
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-90 337.0 215 80.0
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.4e-90 336.7 221 77.4
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 3.1e-90 335.5 215 79.5
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 2.0e-89 332.8 215 79.1
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 3.4e-89 332.0 206 82.0
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 3.7e-88 328.6 196 84.2
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.4e-87 326.6 218 76.1
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 2.4e-87 325.9 215 80.5
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 6.0e-86 321.2 218 73.4
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.7e-85 319.7 210 75.2
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 5.1e-85 318.2 218 73.4
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 2.5e-84 315.8 203 75.4
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 4.3e-84 315.1 277 59.2
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 2.1e-83 312.8 185 85.4
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 7.6e-81 304.3 185 85.4
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.0e-77 293.9 174 84.5
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.1e-76 290.4 173 84.4
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 5.6e-76 288.1 164 85.4
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 2.4e-74 282.7 201 72.6
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.1e-71 273.9 219 58.9
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 3.5e-70 268.9 210 64.3
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 5.6e-68 261.5 210 61.0
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.4e-66 256.9 218 66.1
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 7.9e-62 241.1 145 84.8
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.9e-60 236.5 212 62.3
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 5.6e-60 235.0 210 56.7
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 9.6e-60 234.2 139 82.7
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 6.9e-58 228.0 145 82.8
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.2e-57 227.3 176 70.5
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 9.6e-52 207.6 157 73.9
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 9.6e-52 207.6 215 56.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 3.4e-49 199.1 119 84.0
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.6e-46 190.3 174 59.8
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 6.0e-46 188.3 110 81.8
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.4e-42 177.2 162 53.7
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 4.6e-38 162.2 217 49.3
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 6.3e-35 151.8 91 85.7
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 3.4e-33 146.0 84 88.1
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.3e-24 117.5 81 75.3
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 1.3e-16 90.9 56 76.8
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 6.5e-16 88.6 53 75.5
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 8.5e-16 88.2 48 83.3
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.9e-15 87.0 46 89.1
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 7.2e-15 85.1 66 69.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 1.7e-11 73.9 99 46.5
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 2.5e-07 60.1 34 82.4
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 7.2e-07 58.5 34 82.4


User provided reference genes

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