Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.7e-239 832.4 462 100.0
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.4e-148 530.4 462 68.4
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 8.6e-143 511.1 477 65.8
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.6e-136 490.3 469 63.8
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 2.1e-133 479.9 469 60.8
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 1.3e-109 401.0 483 54.0
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.6e-109 400.6 484 56.4
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 2.4e-108 396.7 485 54.8
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.6e-107 393.3 485 57.9
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 8.4e-106 388.3 486 50.6
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 7.1e-105 385.2 485 56.3
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.3e-103 380.9 478 51.7
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.1e-102 377.9 493 48.5
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 9.6e-102 374.8 478 53.8
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.4e-100 370.9 485 55.7
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 3.1e-100 369.8 485 54.4
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.7e-98 364.0 474 48.7
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 1.7e-98 364.0 473 51.6
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.9e-98 363.2 486 50.4
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 2.9e-98 363.2 472 49.2
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.1e-97 361.3 487 51.1
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.2e-97 359.8 484 50.2
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 2.1e-96 357.1 469 48.8
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.7e-96 356.7 478 49.2
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 3.6e-96 356.3 468 52.1
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.0e-95 354.8 478 50.0
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.3e-95 354.4 478 50.8
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.3e-95 354.4 471 49.0
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.8e-95 354.0 478 48.7
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 5.1e-95 352.4 478 50.2
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.4e-92 344.4 478 49.2
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 3.1e-92 343.2 473 50.3
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 9.1e-92 341.7 480 47.9
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.5e-91 340.9 477 50.9
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.0e-91 340.5 478 48.3
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 2.0e-91 340.5 484 49.0
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 4.5e-91 339.3 478 48.1
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 7.7e-91 338.6 375 58.4
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.3e-90 337.8 479 48.4
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 3.8e-90 336.3 477 45.9
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.0e-90 335.9 478 47.9
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 5.0e-90 335.9 477 52.4
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.1e-89 334.7 325 60.9
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.2e-88 331.3 485 53.8
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 2.1e-88 330.5 479 46.8
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.0e-87 326.6 487 48.5
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.7e-87 325.5 484 48.6
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 8.8e-87 325.1 485 47.4
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.4e-86 322.0 478 48.5
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.7e-85 320.9 475 46.1
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.8e-85 320.1 479 51.6
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.7e-85 319.7 485 51.1
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 4.8e-85 319.3 481 48.0
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 2.4e-84 317.0 473 49.3
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.5e-83 314.3 483 47.2
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 4.5e-83 312.8 483 46.4
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 5.9e-83 312.4 428 47.7
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 7.7e-83 312.0 478 46.0
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.3e-82 311.2 483 46.4
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.8e-79 300.8 478 45.4
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 2.4e-76 290.4 484 45.2
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 2.4e-76 290.4 475 45.9
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.7e-74 284.3 499 43.1
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 2.9e-74 283.5 477 44.2
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.8e-74 283.1 442 46.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.6e-72 277.7 477 45.5
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 6.1e-72 275.8 482 43.8
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.8e-71 274.2 480 42.7
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 8.8e-71 271.9 484 44.2
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.3e-70 270.0 467 44.3
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.8e-69 266.9 477 47.0
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 3.7e-69 266.5 498 41.4
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.0e-66 258.5 482 45.6
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.2e-64 251.5 481 41.2
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.0e-63 248.4 401 46.4
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 6.8e-63 245.7 386 46.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.7e-61 241.1 522 41.8
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.8e-61 239.6 457 43.3
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.4e-60 236.1 375 45.9
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 7.0e-60 235.7 476 42.0
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.7e-59 233.8 292 53.4
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 5.9e-59 232.6 506 39.1
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 5.0e-58 229.6 484 40.9
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 6.5e-58 229.2 506 39.7
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 3.2e-57 226.9 472 38.1
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 9.5e-57 225.3 414 44.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.3e-55 220.7 296 52.4
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.3e-55 220.7 479 39.7
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.2e-54 218.4 293 51.5
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 4.4e-54 216.5 479 39.7
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 9.8e-54 215.3 465 42.2
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.8e-52 211.1 478 37.4
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 4.5e-51 206.5 292 51.0
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 5.9e-51 206.1 506 38.3
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.3e-49 200.3 429 41.7
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.2e-48 198.4 478 37.9
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 5.2e-47 193.0 469 40.3
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 4.4e-46 189.9 534 38.0
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 9.8e-46 188.7 534 38.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.1e-44 185.3 424 38.7
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 7.0e-44 182.6 459 39.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.2e-43 181.8 530 37.9
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 2.0e-43 181.0 528 37.7
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.3e-42 178.3 453 39.5
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 4.3e-41 173.3 475 36.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 7.3e-41 172.6 292 46.6
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.8e-39 167.9 184 53.3
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.3e-39 167.5 332 42.2
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.5e-38 162.5 475 35.4
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.5e-38 162.5 475 35.4
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.3e-37 161.8 325 41.5
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.9e-37 160.6 479 38.4
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 2.4e-36 157.5 325 41.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 7.8e-35 152.5 477 29.8
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 3.3e-33 147.1 487 38.6
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 4.3e-33 146.7 97 77.3
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.4e-31 141.7 470 32.1
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 8.3e-29 132.5 176 47.2
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.1e-28 132.1 469 32.4
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.7e-26 124.8 398 32.9
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.9e-25 121.3 478 39.3
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 1.2e-19 102.1 242 43.0
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 3.6e-16 90.5 238 37.8
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.8e-15 88.2 123 43.1
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.4e-15 87.8 349 30.1
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.4e-15 87.8 56 78.6
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 4.0e-15 87.0 291 35.1
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.9e-09 68.2 55 65.5


User provided reference genes

Program Settings