Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 8.1e-58 226.9 115 100.0
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 8.1e-58 226.9 115 100.0
CSS0035544 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.3e-33 144.4 115 66.1
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.0e-31 140.2 103 68.9
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 6.5e-31 137.5 93 73.1
CSS0027816 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 7.9e-29 130.6 115 61.7
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.9e-27 125.9 95 68.4
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 2.5e-22 109.0 94 62.8
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 1.1e-19 100.1 101 54.5
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.3e-18 96.7 101 54.5
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.7e-18 95.1 105 51.4
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 8.2e-18 94.0 97 53.6
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.4e-17 93.2 105 50.5
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 2.4e-17 92.4 79 59.5
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 1.5e-16 89.7 83 56.6
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 2.6e-16 89.0 97 49.5
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 8.5e-15 84.0 101 49.5
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 1.1e-14 83.6 95 46.3
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 1.4e-14 83.2 103 48.5
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 1.9e-14 82.8 101 47.5
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 1.9e-14 82.8 72 59.7
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 5.5e-14 81.3 101 46.5
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 9.4e-14 80.5 103 47.6
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 1.6e-13 79.7 101 46.5
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 3.6e-13 78.6 106 46.2
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 4.6e-13 78.2 96 49.0
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 2.0e-11 72.8 101 43.6
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 5.7e-11 71.2 101 42.6
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 7.4e-11 70.9 101 42.6
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 1.3e-10 70.1 97 43.3
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 2.2e-10 69.3 103 39.8
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 2.8e-10 68.9 54 61.1
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.8e-10 68.9 75 50.7
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 3.7e-10 68.6 103 38.8
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.1e-09 67.0 106 42.5
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.4e-09 66.6 105 40.0
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.8e-09 66.2 103 44.7
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 2.4e-09 65.9 65 55.4
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 2.4e-09 65.9 93 43.0
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.4e-09 65.9 75 45.3
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 3.1e-09 65.5 104 42.3
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.1e-09 65.5 90 47.8
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 3.1e-09 65.5 70 52.9
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 4.1e-09 65.1 84 48.8
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 4.1e-09 65.1 50 64.0
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 5.3e-09 64.7 78 44.9
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 5.3e-09 64.7 105 39.0
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 6.9e-09 64.3 87 49.4
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.2e-08 63.5 59 59.3
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.0e-08 62.8 96 43.8
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.0e-08 62.8 90 46.7
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 2.6e-08 62.4 41 63.4
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 3.4e-08 62.0 91 41.8
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 3.4e-08 62.0 73 45.2
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.4e-08 62.0 83 50.6
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 3.4e-08 62.0 83 50.6
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 3.4e-08 62.0 62 56.5
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 4.5e-08 61.6 101 41.6
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 5.9e-08 61.2 73 47.9
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 5.9e-08 61.2 93 41.9
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 5.9e-08 61.2 105 40.0
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 7.7e-08 60.8 44 68.2
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 7.7e-08 60.8 44 68.2
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 7.7e-08 60.8 90 44.4
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.0e-07 60.5 97 39.2
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 1.0e-07 60.5 90 42.2
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.7e-07 59.7 90 42.2
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 2.2e-07 59.3 91 46.2
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 2.9e-07 58.9 61 54.1
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 2.9e-07 58.9 39 69.2
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 2.9e-07 58.9 94 38.3
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 3.8e-07 58.5 44 63.6
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 3.8e-07 58.5 90 40.0
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 6.5e-07 57.8 90 44.4
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 6.5e-07 57.8 93 39.8
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 8.5e-07 57.4 81 42.0
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.5e-07 57.4 81 42.0
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 8.5e-07 57.4 90 42.2
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 8.5e-07 57.4 84 42.9
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 8.5e-07 57.4 65 50.8
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.1e-06 57.0 90 42.2
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 2.5e-06 55.8 81 40.7
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 2.5e-06 55.8 38 65.8
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.2e-06 55.5 60 53.3
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.2e-06 55.5 72 44.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 3.2e-06 55.5 99 39.4
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 5.5e-06 54.7 79 44.3
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 5.5e-06 54.7 101 36.6
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.5e-06 54.7 81 40.7
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 5.5e-06 54.7 54 48.1
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 5.5e-06 54.7 54 48.1
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 7.2e-06 54.3 64 50.0
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.2e-06 54.3 81 40.7
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 7.2e-06 54.3 56 48.2


User provided reference genes

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