Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-101 373.2 184 100.0
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.3e-86 322.4 169 94.7
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.6e-47 193.4 172 59.3
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 4.6e-47 191.8 167 58.7
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.1e-37 160.6 167 52.7
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 6.9e-35 151.4 174 51.1
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 3.8e-33 145.6 179 46.9
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 3.8e-33 145.6 179 46.9
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.8e-30 136.7 184 45.7
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 3.1e-27 125.9 174 44.3
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 5.3e-27 125.2 171 46.8
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 9.0e-27 124.4 171 46.8
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.0e-26 123.2 176 43.2
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 2.0e-26 123.2 180 46.7
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 5.9e-26 121.7 172 41.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 3.8e-25 119.0 172 44.2
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.4e-24 117.1 176 41.5
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.4e-24 117.1 176 43.2
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 9.4e-24 114.4 176 41.5
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 9.4e-24 114.4 204 37.3
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 2.7e-23 112.8 173 43.9
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 4.3e-21 105.5 171 41.5
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 4.3e-21 105.5 190 38.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.3e-20 104.0 167 39.5
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.3e-20 104.0 167 39.5
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.3e-20 104.0 167 39.5
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 1.3e-20 104.0 170 38.8
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 2.2e-20 103.2 175 40.6
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 2.8e-20 102.8 169 40.2
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.8e-20 102.1 168 39.9
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-19 100.9 168 39.9
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 2.4e-19 99.8 171 41.5
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 4.1e-19 99.0 179 40.2
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 4.1e-19 99.0 171 41.5
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 6.9e-19 98.2 167 39.5
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.2e-18 97.4 170 40.6
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 2.6e-18 96.3 168 36.3
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 2.6e-18 96.3 216 38.0
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 4.5e-18 95.5 206 33.0
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 7.7e-18 94.7 205 35.1
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 1.0e-17 94.4 168 41.7
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.9e-17 92.8 183 38.3
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.8e-17 92.4 56 76.8
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 3.8e-17 92.4 170 39.4
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 5.0e-17 92.0 217 39.2
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 6.5e-17 91.7 216 34.7
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 8.5e-17 91.3 216 34.7
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.1e-16 90.9 170 40.0
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.4e-16 90.5 186 38.7
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.4e-16 90.5 193 35.2
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 4.2e-16 89.0 168 38.7
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 4.2e-16 89.0 173 38.7
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 4.2e-16 89.0 173 38.7
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 9.4e-16 87.8 212 32.1
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.2e-15 87.4 178 34.3
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.7e-15 86.3 176 36.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.0e-14 84.3 169 37.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 3.0e-14 82.8 182 32.4
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 4.4e-13 79.0 179 35.2
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.3e-12 77.4 182 33.0
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 3.7e-12 75.9 124 37.9
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 8.2e-12 74.7 191 34.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 8.2e-12 74.7 211 29.4
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 7.0e-11 71.6 176 35.8
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 9.1e-11 71.2 181 33.1
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.2e-10 70.9 175 34.9
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 2.6e-10 69.7 171 35.7
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 7.7e-10 68.2 90 44.4
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.7e-09 67.0 51 60.8
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.7e-09 67.0 194 29.4
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.7e-09 67.0 172 34.9
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 2.9e-09 66.2 71 52.1
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.8e-09 65.9 171 32.2
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 8.5e-09 64.7 171 31.6
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.1e-08 64.3 95 43.2
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.5e-08 63.2 141 38.3
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 2.5e-08 63.2 176 32.4
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 7.2e-08 61.6 177 31.6
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 7.2e-08 61.6 95 43.2
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.2e-07 60.8 57 54.4
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.2e-07 60.8 186 29.0
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 3.6e-07 59.3 50 58.0
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 3.6e-07 59.3 175 32.0
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 4.7e-07 58.9 176 33.0
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 6.1e-07 58.5 176 29.5
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.4e-06 57.4 176 33.0
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 2.3e-06 56.6 162 33.3
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 4.0e-06 55.8 176 32.4
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 8.8e-06 54.7 50 56.0


User provided reference genes

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