Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.1e-300 1035.8 509 100.0
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-265 919.5 538 86.2
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.6e-261 903.7 538 84.4
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.4e-212 740.7 593 68.8
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.5e-196 689.1 539 65.7
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.2e-195 686.0 537 64.2
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 8.2e-195 684.1 535 64.5
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 7.7e-177 624.4 534 59.6
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 4.5e-169 598.6 542 56.1
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.3e-160 570.5 533 55.3
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 7.2e-159 564.7 539 54.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 8.0e-158 561.2 533 54.6
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 8.0e-158 561.2 533 56.7
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.5e-156 557.0 535 55.3
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 2.6e-156 556.2 536 53.5
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 3.4e-156 555.8 538 53.2
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 7.5e-156 554.7 540 53.0
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.6e-153 547.0 533 55.0
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.5e-151 540.4 536 52.2
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.5e-148 530.4 548 51.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 3.7e-147 525.8 531 51.2
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.2e-145 520.8 537 51.4
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.3e-144 517.3 531 48.4
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.9e-143 513.5 533 50.5
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 4.3e-143 512.3 530 50.0
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 3.6e-142 509.2 543 49.9
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.8e-141 506.9 535 50.1
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.8e-141 506.9 539 49.5
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 3.1e-141 506.1 534 50.4
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 5.2e-141 505.4 538 49.8
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.2e-140 504.2 537 50.1
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.4e-140 502.7 537 49.5
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 5.8e-140 501.9 533 49.7
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 5.8e-140 501.9 538 50.0
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.3e-139 500.7 539 47.9
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.9e-139 499.6 539 49.5
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.4e-138 497.3 544 49.4
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 4.1e-138 495.7 539 49.0
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.2e-137 494.2 546 48.0
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 3.0e-136 489.6 543 49.2
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 5.1e-136 488.8 548 48.9
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.2e-134 484.2 543 49.5
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 2.1e-134 483.4 530 47.5
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.1e-133 481.1 537 49.0
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 5.2e-133 478.8 531 48.4
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 6.8e-133 478.4 547 48.4
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.2e-132 477.6 539 47.7
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 9.2e-130 468.0 537 46.7
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.7e-129 466.5 547 46.4
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.0e-128 464.5 537 47.5
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.0e-128 464.5 537 46.2
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.3e-128 464.2 534 46.8
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 2.3e-128 463.4 535 47.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 5.1e-128 462.2 547 47.3
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 6.6e-128 461.8 535 47.5
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.1e-127 461.1 538 48.0
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 1.1e-127 461.1 446 54.0
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.3e-127 459.1 547 45.3
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 7.3e-127 458.4 535 48.4
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 7.3e-127 458.4 544 47.1
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.6e-126 457.2 529 45.6
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.8e-126 456.4 531 46.3
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 3.6e-126 456.1 538 46.1
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 8.1e-126 454.9 531 46.3
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 3.1e-125 453.0 538 47.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.9e-125 451.4 536 46.3
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-124 451.1 536 46.8
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.8e-124 448.7 538 45.0
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.7e-123 447.2 557 45.1
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.7e-123 447.2 552 44.2
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.4e-122 442.2 535 46.2
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 1.2e-121 441.0 532 46.1
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-121 441.0 535 45.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.7e-121 439.9 535 45.2
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.7e-120 437.2 531 46.1
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 2.3e-120 436.8 527 45.9
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 9.0e-117 424.9 515 46.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.2e-116 424.5 543 44.4
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.4e-116 422.9 522 46.9
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 4.4e-116 422.5 444 50.9
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 6.4e-115 418.7 533 41.8
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.9e-112 409.5 546 43.8
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.6e-110 402.9 517 45.1
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.8e-110 402.5 554 42.8
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.4e-109 401.0 540 42.6
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.4e-109 401.0 536 42.4
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.4e-109 401.0 555 42.9
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.1e-106 391.3 554 40.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 5.4e-106 389.0 543 42.0
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 9.3e-106 388.3 459 44.2
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.6e-105 387.5 538 40.9
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.6e-105 387.5 544 43.0
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.8e-102 376.7 546 41.0
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.8e-102 376.7 421 48.9
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.8e-102 376.7 332 58.7
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 8.4e-99 365.2 540 40.0
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.4e-98 364.4 519 41.0
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.5e-92 344.4 533 37.5
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.0e-92 344.0 532 37.0
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 1.7e-91 340.9 533 36.4
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 4.2e-90 336.3 532 36.8
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 4.2e-90 336.3 532 36.8
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 4.2e-90 336.3 532 36.8
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 8.7e-88 328.6 491 42.0
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.6e-81 307.8 513 37.0
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 2.8e-78 297.0 321 50.5
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.9e-75 287.0 619 32.6
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.4e-72 278.1 583 34.5
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 2.0e-68 264.2 320 47.8
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.7e-65 253.8 304 43.8
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 5.3e-61 239.6 405 41.0
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-60 238.0 279 45.9
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.0e-60 237.7 282 45.4
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 3.1e-53 213.8 577 31.0
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.0e-48 198.7 230 43.9
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.2e-44 185.3 561 29.6
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 4.2e-42 176.8 304 33.9
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 2.9e-35 154.1 209 42.6
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 1.9e-34 151.4 570 26.1
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 4.0e-32 143.7 561 24.8
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 4.9e-30 136.7 386 27.7
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.0e-28 129.8 228 37.3
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.5e-26 125.2 301 29.6
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 4.3e-26 123.6 132 46.2
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.2e-23 115.5 107 52.3
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 2.6e-23 114.4 196 32.1
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.4e-23 114.0 130 42.3
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 3.9e-19 100.5 216 33.3
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 2.5e-18 97.8 200 31.5
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 4.3e-18 97.1 125 46.4
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.8e-17 94.4 203 33.5
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-13 82.4 104 38.5
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 9.2e-13 79.3 91 37.4
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.7e-12 77.8 187 31.0
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.7e-12 77.8 69 55.1
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.6e-12 77.0 187 30.5
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.1e-09 66.2 161 35.4
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.4e-08 64.7 86 36.0
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 8.9e-08 62.8 62 48.4
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 3.8e-06 57.4 181 26.0
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.9e-06 57.0 65 40.0
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 6.4e-06 56.6 60 40.0


User provided reference genes

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