Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015242 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 7.6e-112 407.1 201 100.0
CSS0002848 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 5.8e-27 125.2 63 92.1
Dinv32197 Davidia involucrata HOM05D003609 ORTHO05D004185 3.2e-25 119.4 63 85.7
QL07p044690 Quercus lobata HOM05D003609 ORTHO05D004185 4.2e-25 119.0 63 87.3
QL11p001509 Quercus lobata HOM05D003609 ORTHO05D004185 4.2e-25 119.0 63 87.3
QL11p001978 Quercus lobata HOM05D003609 ORTHO05D004185 4.2e-25 119.0 63 87.3
SGA_v2.0_scaffold223G42845 Striga asiatica HOM05D003609 ORTHO05D004185 4.2e-25 119.0 63 87.3
TAR624G1151 Trochodendron aralioides HOM05D003609 ORTHO05D004185 4.2e-25 119.0 63 87.3
TAR626G0448 Trochodendron aralioides HOM05D003609 ORTHO05D004185 4.2e-25 119.0 63 87.3
GSVIVG01021587001 Vitis vinifera HOM05D003609 ORTHO05D004185 4.2e-25 119.0 63 88.9
EL10Ac9g22433 Beta vulgaris HOM05D003609 ORTHO05D004185 7.1e-25 118.2 63 87.3
Hma1.2p1_1418F.1_g282240 Hydrangea macrophylla HOM05D003609 ORTHO05D004185 9.2e-25 117.9 63 84.1
Haze_05753 Corylus avellana HOM05D003609 ORTHO05D004185 1.2e-24 117.5 63 87.3
Manes.06G061000 Manihot esculenta HOM05D003609 ORTHO05D004185 1.6e-24 117.1 63 85.7
PGR031G0855 Punica granatum HOM05D003609 ORTHO05D004185 1.6e-24 117.1 63 85.7
Ciclev10014106m.g Citrus clementina HOM05D003609 ORTHO05D004185 2.1e-24 116.7 63 85.7
Medtr8g089380 Medicago truncatula HOM05D003609 ORTHO05D004185 2.1e-24 116.7 63 87.3
Phvul.002G252300 Phaseolus vulgaris HOM05D003609 ORTHO05D004185 2.1e-24 116.7 63 87.3
MSTRG.16279 Avicennia marina HOM05D003609 ORTHO05D004185 2.7e-24 116.3 63 84.1
SalBow8G0777 Salvia bowleyana HOM05D003609 ORTHO05D004185 2.7e-24 116.3 63 82.5
Sp7g19180 Schrenkiella parvula HOM05D003609 ORTHO05D004185 2.7e-24 116.3 64 81.2
COL.COLO4_17669 Corchorus olitorius HOM05D003609 ORTHO05D004185 3.5e-24 115.9 63 84.1
vmacro03407 Vaccinium macrocarpon HOM05D003609 ORTHO05D004185 3.5e-24 115.9 63 85.7
Cpa.g.sc17.69 Carica papaya HOM05D003609 ORTHO05D004185 4.6e-24 115.5 63 84.1
Migut.M01878 Erythranthe guttata HOM05D003609 ORTHO05D004185 4.6e-24 115.5 93 66.7
Atru.chr10.957 Acer truncatum HOM05D003609 ORTHO05D004185 6.0e-24 115.2 63 84.1
Thhalv10024273m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 6.0e-24 115.2 64 81.2
TPR.G6260 Trifolium pratense HOM05D003609 ORTHO05D004185 7.8e-24 114.8 63 85.7
Actinidia07464 Actinidia chinensis HOM05D003609 ORTHO05D004185 1.0e-23 114.4 63 84.1
arahy.Tifrunner.gnm1.ann1.1CC5MB Arachis hypogaea HOM05D003609 ORTHO05D004185 1.0e-23 114.4 63 84.1
arahy.Tifrunner.gnm1.ann1.UWD6C2 Arachis hypogaea HOM05D003609 ORTHO05D004185 1.0e-23 114.4 63 84.1
Cfa000850 Carpinus fangiana HOM05D003609 ORTHO05D004185 1.0e-23 114.4 63 85.7
Ca_17799_v3 Cicer arietinum L. HOM05D003609 ORTHO05D004185 1.0e-23 114.4 63 84.1
Lj4g0015667 Lotus japonicus HOM05D003609 ORTHO05D004185 1.0e-23 114.4 63 84.1
Hund21559 Selenicereus undatus HOM05D003609 ORTHO05D004185 1.0e-23 114.4 63 84.1
VMungo0251G1043 Vigna mungo HOM05D003609 ORTHO05D004185 1.0e-23 114.4 63 85.7
EL10Ac8g19595 Beta vulgaris HOM05D003609 ORTHO05D004185 1.3e-23 114.0 63 84.1
Aqoxy1G01653 Aquilegia oxysepala HOM05D003609 ORTHO05D004185 1.7e-23 113.6 63 81.0
BcaC01g00716 Brassica carinata HOM05D003609 ORTHO05D004185 1.7e-23 113.6 64 79.7
A08p15280 Brassica napus HOM05D003609 ORTHO05D004185 1.7e-23 113.6 64 79.7
C03p83520 Brassica napus HOM05D003609 ORTHO05D004185 1.7e-23 113.6 64 79.7
BolC3t20633H Brassica oleracea HOM05D003609 ORTHO05D004185 1.7e-23 113.6 64 79.7
BraA08t33506Z Brassica rapa HOM05D003609 ORTHO05D004185 1.7e-23 113.6 64 79.7
CiPaw.10G086600 Carya illinoinensis HOM05D003609 ORTHO05D004185 1.7e-23 113.6 63 84.1
Sabra16G0235700 Salix brachista HOM05D003609 ORTHO05D004185 1.7e-23 113.6 63 82.5
AUR62042468 Chenopodium quinoa HOM05D003609 ORTHO05D004185 3.0e-23 112.8 63 82.5
AUR62042762 Chenopodium quinoa HOM05D003609 ORTHO05D004185 3.0e-23 112.8 63 82.5
Psat7g060520 Pisum sativum HOM05D003609 ORTHO05D004185 3.0e-23 112.8 63 82.5
Rhsim13G0119500 Rhododendron simsii HOM05D003609 ORTHO05D004185 3.0e-23 112.8 63 82.5
Ah.14g086230 Amaranthus hybridus HOM05D003609 ORTHO05D004185 3.9e-23 112.5 63 82.5
Gohir.A03G216700 Gossypium hirsutum HOM05D003609 ORTHO05D004185 3.9e-23 112.5 63 84.1
Gohir.D02G238300 Gossypium hirsutum HOM05D003609 ORTHO05D004185 3.9e-23 112.5 63 84.1
Gorai.005G266800 Gossypium raimondii HOM05D003609 ORTHO05D004185 3.9e-23 112.5 63 84.1
AT4G21100 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 5.1e-23 112.1 64 79.7
Carub.0007s2033 Capsella rubella HOM05D003609 ORTHO05D004185 5.1e-23 112.1 64 79.7
Duzib132G0117 Durio zibethinus HOM05D003609 ORTHO05D004185 5.1e-23 112.1 64 84.4
ECA236G2324 Erigeron canadensis HOM05D003609 ORTHO05D004185 6.6e-23 111.7 63 82.5
HanXRQChr15g0481541 Helianthus annuus HOM05D003609 ORTHO05D004185 6.6e-23 111.7 63 82.5
Nitab4.5_0000100g0230 Nicotiana tabacum HOM05D003609 ORTHO05D004185 6.6e-23 111.7 63 79.4
Nitab4.5_0001633g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 6.6e-23 111.7 63 79.4
Thecc.02G010900 Theobroma cacao HOM05D003609 ORTHO05D004185 6.6e-23 111.7 63 82.5
Oeu015191.1 Olea europaea HOM05D003609 ORTHO05D004185 8.7e-23 111.3 63 81.0
Potri.001G357900 Populus trichocarpa HOM05D003609 ORTHO05D004185 8.7e-23 111.3 63 82.5
TWI73G0261 Tripterygium wilfordii HOM05D003609 ORTHO05D004185 8.7e-23 111.3 60 86.7
AL7G33030 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 1.1e-22 110.9 64 78.1
AT4G05420 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 1.1e-22 110.9 63 81.0
Lsat_1_v5_gn_7_31981 Lactuca sativa HOM05D003609 ORTHO05D004185 1.9e-22 110.2 63 79.4
AL6G49010 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 2.5e-22 109.8 63 79.4
Carub.0006s3333 Capsella rubella HOM05D003609 ORTHO05D004185 2.5e-22 109.8 63 79.4
CARHR252160 Cardamine hirsuta HOM05D003609 ORTHO05D004185 2.5e-22 109.8 63 79.4
Thhalv10028374m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 2.5e-22 109.8 63 79.4
Solyc02g021650.3 Solanum lycopersicum HOM05D003609 ORTHO05D004185 2.5e-22 109.8 63 77.8
Sopen02g006220 Solanum pennellii HOM05D003609 ORTHO05D004185 2.5e-22 109.8 63 77.8
PSO541G5911 Papaver somniferum HOM05D003609 ORTHO05D004185 3.3e-22 109.4 63 79.4
PSO675G5242 Papaver somniferum HOM05D003609 ORTHO05D004185 3.3e-22 109.4 63 79.4
Peaxi162Scf00155g01114 Petunia axillaris HOM05D003609 ORTHO05D004185 3.3e-22 109.4 63 76.2
Peaxi162Scf00213g01216 Petunia axillaris HOM05D003609 ORTHO05D004185 3.3e-22 109.4 63 76.2
Lalb_Chr07g0185651 Lupinus albus HOM05D003609 ORTHO05D004185 4.3e-22 109.0 63 82.5
Aa31LG9G9160 Aethionema arabicum HOM05D003609 ORTHO05D004185 7.3e-22 108.2 63 79.4
A09p25340 Brassica napus HOM05D003609 ORTHO05D004185 7.3e-22 108.2 63 77.8
C09p32340 Brassica napus HOM05D003609 ORTHO05D004185 7.3e-22 108.2 63 77.8
BraA09t38116Z Brassica rapa HOM05D003609 ORTHO05D004185 7.3e-22 108.2 63 77.8
CARHR227680 Cardamine hirsuta HOM05D003609 ORTHO05D004185 7.3e-22 108.2 63 79.4
Nn2g14648 Nelumbo nucifera HOM05D003609 ORTHO05D004185 7.3e-22 108.2 63 79.4
CAN.G1437.4 Capsicum annuum HOM05D003609 ORTHO05D004185 9.6e-22 107.8 63 76.2
Duzib248G1499 Durio zibethinus HOM05D003609 ORTHO05D004185 9.6e-22 107.8 63 79.4
Sc17g0004700 Simmondsia chinensis HOM05D003609 ORTHO05D004185 9.6e-22 107.8 63 77.8
THA.LOC104812376 Tarenaya hassleriana HOM05D003609 ORTHO05D004185 9.6e-22 107.8 63 79.4
DCAR_027872 Daucus carota HOM05D003609 ORTHO05D004185 1.6e-21 107.1 63 79.4
Atru.chr10.954 Acer truncatum HOM05D003609 ORTHO05D004185 2.8e-21 106.3 63 81.0
Eucgr.H04822 Eucalyptus grandis HOM05D003609 ORTHO05D004185 2.8e-21 106.3 63 77.8
BolC9t56079H Brassica oleracea HOM05D003609 ORTHO05D004185 3.6e-21 105.9 63 76.2
BcaC04g21393 Brassica carinata HOM05D003609 ORTHO05D004185 4.7e-21 105.5 64 73.4
MD05G1276000 Malus domestica HOM05D003609 ORTHO05D004185 4.7e-21 105.5 63 76.2
MD00G1109600 Malus domestica HOM05D003609 ORTHO05D004185 6.2e-21 105.1 63 74.6
Duzib132G1150 Durio zibethinus HOM05D003609 ORTHO05D004185 8.1e-21 104.8 63 79.4
HanXRQChr04g0113571 Helianthus annuus HOM05D003609 ORTHO05D004185 8.1e-21 104.8 63 76.2
Prupe.4G088300 Prunus persica HOM05D003609 ORTHO05D004185 8.1e-21 104.8 63 74.6
ClCG03G006390 Citrullus lanatus HOM05D003609 ORTHO05D004185 1.4e-20 104.0 63 76.2
MELO3C002793.2 Cucumis melo HOM05D003609 ORTHO05D004185 1.4e-20 104.0 63 76.2
CsaV3_1G037020 Cucumis sativus L. HOM05D003609 ORTHO05D004185 1.4e-20 104.0 63 76.2
Sp6g03670 Schrenkiella parvula HOM05D003609 ORTHO05D004185 1.4e-20 104.0 59 79.7
Lj6g0025210 Lotus japonicus HOM05D003609 ORTHO05D004185 1.8e-20 103.6 63 77.8
Mapoly0054s0064 Marchantia polymorpha HOM05D003609 ORTHO05D004185 2.4e-20 103.2 63 74.6
Nn7g36935 Nelumbo nucifera HOM05D003609 ORTHO05D004185 2.4e-20 103.2 63 76.2
FvH4_3g09700 Fragaria vesca HOM05D003609 ORTHO05D004185 4.0e-20 102.4 63 73.0
FAN16G3689 Fragaria x ananassa HOM05D003609 ORTHO05D004185 4.0e-20 102.4 63 73.0
FAN21G1100 Fragaria x ananassa HOM05D003609 ORTHO05D004185 4.0e-20 102.4 63 73.0
FAN25G3439 Fragaria x ananassa HOM05D003609 ORTHO05D004185 4.0e-20 102.4 63 73.0
Zm00001eb297320 Zea mays HOM05D003609 ORTHO05D004185 4.0e-20 102.4 63 76.2
ATR0594G240 Amborella trichopoda HOM05D003609 ORTHO05D004185 5.3e-20 102.1 63 76.2
Sed0022224 Sechium edule HOM05D003609 ORTHO05D004185 5.3e-20 102.1 63 74.6
VMungo0464G0096 Vigna mungo HOM05D003609 ORTHO05D004185 1.2e-19 100.9 61 78.7
HPP92_020750 Vanilla planifolia HOM05D003609 ORTHO05D004185 1.5e-19 100.5 63 73.0
FAN11G0451 Fragaria x ananassa HOM05D003609 ORTHO05D004185 4.4e-19 99.0 63 71.4
Pp3c9_22270 Physcomitrium patens HOM05D003609 ORTHO05D004185 4.4e-19 99.0 63 71.4
Atru.chr10.947 Acer truncatum HOM05D003609 ORTHO05D004185 5.8e-19 98.6 64 76.6
RcHm_v2.0_Chr5g0015371 Rosa chinensis HOM05D003609 ORTHO05D004185 5.8e-19 98.6 63 71.4
Pp3c15_18160 Physcomitrium patens HOM05D003609 ORTHO05D004185 9.9e-19 97.8 63 68.3
AagrBONN_evm.TU.Sc2ySwM_228.4774 Anthoceros agrestis HOM05D003609 ORTHO05D004185 1.3e-18 97.4 63 68.3
Os05g0592400 Oryza sativa ssp. japonica HOM05D003609 ORTHO05D004185 1.3e-18 97.4 61 73.8
CANSAT35G1843 Cannabis sativa HOM05D003609 ORTHO05D004185 2.2e-18 96.7 63 71.4
Zm00001eb345240 Zea mays HOM05D003609 ORTHO05D004185 2.2e-18 96.7 63 73.0
SMO119G0053 Selaginella moellendorffii HOM05D003609 ORTHO05D004185 1.9e-17 93.6 63 68.3
CDE01G0431 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 2.4e-17 93.2 65 69.2
CDE02G3832 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 3.5e-16 89.4 63 66.7
CBR_g19725 Chara braunii HOM05D003609 ORTHO05D004185 7.8e-16 88.2 63 65.1
Peaxi162Scf00296g01317 Petunia axillaris HOM05D003609 ORTHO05D004185 5.3e-12 75.5 63 57.1
Nitab4.5_0005101g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 4.9e-10 68.9 63 52.4
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 1.9e-09 67.0 89 38.2
CAN.G1126.16 Capsicum annuum HOM05D003609 ORTHO05D004185 1.3e-07 60.8 66 50.0
CAN.G371.123 Capsicum annuum HOM05D003609 ORTHO05D004185 3.0e-07 59.7 83 41.0
AL5G26110 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 5.1e-07 58.9 55 52.7
Actinidia23238 Actinidia chinensis HOM05D003609 ORTHO05D004185 4.3e-06 55.8 32 84.4
TPR.G4955 Trifolium pratense HOM05D003609 ORTHO05D004185 4.3e-06 55.8 48 52.1


User provided reference genes

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