Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 2.5e-192 675.2 329 100.0
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 2.1e-159 565.8 329 84.2
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 5.0e-145 518.1 329 78.1
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 3.6e-143 511.9 335 78.2
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.3e-132 476.9 335 72.2
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 2.5e-128 462.6 331 68.6
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 2.8e-127 459.1 326 70.6
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 6.2e-127 458.0 286 76.6
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 4.0e-126 455.3 319 69.6
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 1.5e-125 453.4 334 67.4
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 1.7e-124 449.9 257 81.3
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 6.4e-124 448.0 310 71.0
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 1.9e-123 446.4 291 73.9
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 5.4e-123 444.9 321 67.6
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 2.3e-121 439.5 327 66.1
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 3.0e-121 439.1 327 66.1
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 1.5e-120 436.8 327 66.1
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 1.9e-120 436.4 329 67.5
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 9.5e-120 434.1 329 67.5
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 1.6e-119 433.3 330 67.9
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 6.2e-119 431.4 329 65.0
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 1.8e-118 429.9 326 64.7
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 3.1e-118 429.1 316 69.3
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 8.9e-118 427.6 327 67.0
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 1.5e-117 426.8 330 63.9
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 7.6e-117 424.5 333 61.9
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 7.6e-117 424.5 333 61.9
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 1.7e-116 423.3 321 66.0
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 2.9e-116 422.5 293 67.2
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 6.4e-116 421.4 379 58.6
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 1.1e-115 420.6 286 72.7
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 1.4e-115 420.2 327 66.4
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 7.1e-115 417.9 260 76.2
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 1.2e-114 417.2 338 59.8
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 2.7e-114 416.0 277 69.0
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 4.6e-114 415.2 329 61.4
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 7.8e-114 414.5 329 63.5
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 2.3e-113 412.9 340 60.0
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 8.7e-113 411.0 289 66.8
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 1.5e-112 410.2 259 73.0
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 2.1e-111 406.4 325 61.5
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 2.8e-111 406.0 281 67.6
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 4.7e-111 405.2 306 63.4
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 1.1e-110 404.1 318 60.1
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 2.4e-110 402.9 277 67.1
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 2.4e-110 402.9 342 60.5
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 3.1e-110 402.5 330 63.3
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 4.0e-110 402.1 318 59.7
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 5.2e-110 401.7 321 63.6
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 6.9e-110 401.4 330 60.0
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 9.0e-110 401.0 289 64.0
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 9.0e-110 401.0 326 59.8
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 1.2e-109 400.6 333 58.6
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.2e-109 400.6 375 54.9
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.2e-109 400.6 310 61.3
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 1.2e-109 400.6 319 64.6
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 2.0e-109 399.8 261 66.7
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 2.0e-109 399.8 318 59.4
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 2.0e-109 399.8 331 60.1
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 3.4e-109 399.1 328 62.2
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 4.4e-109 398.7 336 57.7
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 4.4e-109 398.7 301 67.4
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 5.8e-109 398.3 331 59.5
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 9.9e-109 397.5 314 63.1
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 2.9e-108 396.0 261 67.4
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 3.8e-108 395.6 319 63.0
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 8.4e-108 394.4 306 62.1
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 2.4e-107 392.9 261 67.8
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 5.4e-107 391.7 320 59.4
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 1.2e-106 390.6 340 60.0
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 1.2e-106 390.6 363 55.6
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 6.0e-106 388.3 334 60.5
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 2.3e-105 386.3 328 61.0
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 3.9e-105 385.6 344 57.6
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 6.6e-105 384.8 260 67.7
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.5e-104 383.6 260 67.7
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 7.3e-104 381.3 324 58.3
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 3.1e-102 375.9 313 59.4
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 4.0e-102 375.6 253 70.0
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 6.9e-102 374.8 267 65.5
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 1.3e-100 370.5 329 57.4
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 4.9e-100 368.6 246 71.1
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 4.2e-99 365.5 246 72.0
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 4.6e-98 362.1 300 58.0
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 7.4e-96 354.8 329 55.0
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 4.8e-95 352.1 245 65.7
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 8.4e-92 341.3 261 59.4
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 4.2e-91 339.0 261 59.4
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 5.5e-91 338.6 263 59.7
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.8e-89 333.6 208 72.6
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 7.4e-88 328.2 283 55.1
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.4e-86 323.9 210 70.5
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 9.0e-86 321.2 178 84.8
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 1.2e-85 320.9 298 51.3
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 7.6e-85 318.2 246 60.2
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 3.0e-81 306.2 266 53.4
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 3.7e-79 299.3 265 55.5
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.9e-72 276.9 285 50.9
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.2e-69 267.7 307 46.6
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 4.2e-67 259.2 225 58.7
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 4.4e-56 222.6 158 64.6
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 2.2e-55 220.3 136 75.0
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 5.9e-53 212.2 150 70.0
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 9.4e-51 204.9 188 55.9
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.8e-49 200.7 145 62.8
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 4.1e-46 189.5 112 75.0
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 6.1e-42 175.6 318 36.5
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 2.3e-41 173.7 148 59.5
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 1.7e-39 167.5 155 58.1
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 2.1e-34 150.6 159 50.3
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 7.5e-32 142.1 157 52.9
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 4.9e-31 139.4 85 74.1
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 1.8e-30 137.5 166 47.0
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 5.6e-27 125.9 66 89.4
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 5.4e-22 109.4 62 80.6
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 1.0e-20 105.1 211 31.3
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 5.2e-17 92.8 59 72.9
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 8.9e-17 92.0 203 26.6
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 8.9e-17 92.0 213 25.8
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 4.4e-16 89.7 204 26.0
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 5.8e-16 89.4 203 25.1
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 7.5e-16 89.0 203 25.1
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 9.8e-16 88.6 203 25.6
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.7e-15 87.8 207 23.7
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 1.7e-15 87.8 204 26.0
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 1.7e-15 87.8 205 25.4
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 1.7e-15 87.8 203 24.6
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.7e-15 87.8 203 24.6
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 2.2e-15 87.4 212 24.1
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 2.9e-15 87.0 207 25.1
Migut.B01249 Erythranthe guttata HOM05D005005 ORTHO05D006178 2.9e-15 87.0 203 24.6
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 3.7e-15 86.7 203 25.1
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 3.7e-15 86.7 203 24.6
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 4.9e-15 86.3 66 60.6
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 6.4e-15 85.9 234 24.8
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 8.3e-15 85.5 203 25.6
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 8.3e-15 85.5 203 25.6
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 8.3e-15 85.5 203 24.6
Sed0024277 Sechium edule HOM05D005005 ORTHO05D006178 8.3e-15 85.5 205 24.9
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 1.1e-14 85.1 203 24.1
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 1.4e-14 84.7 203 24.6
Sopen01g040300 Solanum pennellii HOM05D005005 ORTHO05D006178 1.4e-14 84.7 215 24.2
Lsat_1_v5_gn_1_117920 Lactuca sativa HOM05D005005 ORTHO05D006178 1.9e-14 84.3 203 24.6
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 2.4e-14 84.0 203 24.6
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 2.4e-14 84.0 225 24.4
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 2.4e-14 84.0 203 24.6
Dinv32010 Davidia involucrata HOM05D005005 ORTHO05D006178 3.2e-14 83.6 204 24.0
Solyc01g096570.3 Solanum lycopersicum HOM05D005005 ORTHO05D006178 3.2e-14 83.6 205 23.9
PGSC0003DMG403003285 Solanum tuberosum HOM05D005005 ORTHO05D006178 3.2e-14 83.6 205 23.9
Manes.11G007250 Manihot esculenta HOM05D005005 ORTHO05D006178 4.1e-14 83.2 203 24.1
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 5.4e-14 82.8 62 61.3
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 5.4e-14 82.8 203 24.6
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 5.4e-14 82.8 206 27.7
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 7.0e-14 82.4 214 23.8
VMungo1127G1151 Vigna mungo HOM05D005005 ORTHO05D006178 7.0e-14 82.4 214 23.4
CAN.G134.16 Capsicum annuum HOM05D005005 ORTHO05D006178 9.2e-14 82.0 205 23.4
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 9.2e-14 82.0 214 23.4
Aqoxy1G00392 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 1.2e-13 81.6 203 23.6
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 1.2e-13 81.6 214 23.4
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.6e-13 81.3 203 24.6
THA.LOC104826755 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 2.7e-13 80.5 203 24.1
MSTRG.5076 Avicennia marina HOM05D005005 ORTHO05D006178 4.6e-13 79.7 204 25.0
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 2.3e-12 77.4 212 24.1
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.5e-11 74.7 207 27.1
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 4.7e-10 69.7 41 73.2


User provided reference genes

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