Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 0.0e+00 1770.0 905 100.0
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1196.0 991 66.7
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1159.8 914 66.7
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1158.3 914 66.6
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 5.2e-309 1064.3 914 61.8
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 1.2e-302 1043.1 995 58.1
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 2.8e-294 1015.4 927 61.4
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 3.0e-288 995.3 908 62.8
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.3e-287 991.5 913 61.0
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 1.5e-279 966.5 914 58.3
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 5.4e-274 948.0 909 55.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 7.1e-274 947.6 909 56.3
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 3.0e-272 942.2 916 55.3
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 5.1e-272 941.4 913 55.3
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 1.9e-271 939.5 912 55.8
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-270 936.0 909 56.3
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 9.2e-266 920.6 912 54.8
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 6.0e-265 917.9 911 53.9
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 7.8e-265 917.5 912 54.9
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 1.5e-260 903.3 915 54.9
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.7e-259 899.8 910 54.4
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 4.9e-259 898.3 913 52.8
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 3.2e-258 895.6 911 54.3
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 7.8e-257 891.0 914 55.3
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 5.3e-253 878.2 965 51.6
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 2.6e-252 875.9 1079 48.2
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 4.9e-251 871.7 913 53.3
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 7.9e-249 864.4 913 53.7
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 1.0e-248 864.0 911 52.4
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 3.3e-247 859.0 953 52.0
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 2.1e-241 839.7 914 51.1
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 3.5e-241 839.0 922 50.9
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 1.1e-239 833.9 913 51.0
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.9e-239 833.2 880 53.4
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 1.9e-239 833.2 919 50.4
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.4e-237 827.0 913 51.8
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 4.9e-235 818.5 909 49.5
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 6.5e-235 818.1 907 51.4
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 4.2e-234 815.5 905 50.9
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 2.3e-232 809.7 915 50.1
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.5e-231 807.0 815 54.0
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 2.5e-231 806.2 911 49.9
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 2.5e-231 806.2 913 50.6
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 4.3e-231 805.4 910 50.9
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 2.2e-230 803.1 913 50.9
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 2.8e-230 802.7 913 50.8
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 2.6e-228 796.2 970 49.6
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 2.5e-226 789.6 921 49.9
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 1.6e-225 786.9 903 50.4
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 2.1e-225 786.6 956 48.2
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 2.3e-224 783.1 916 47.9
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.5e-223 780.4 904 48.0
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 3.2e-218 762.7 917 48.2
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 3.6e-217 759.2 911 49.7
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 6.1e-217 758.4 895 49.1
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 1.1e-215 754.2 910 47.3
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 4.4e-215 752.3 939 49.1
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 7.4e-215 751.5 907 47.4
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 9.7e-215 751.1 911 46.9
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 9.7e-215 751.1 909 47.5
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.8e-214 749.6 912 47.7
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 2.2e-211 740.0 936 45.2
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 1.1e-210 737.6 909 46.8
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 1.2e-209 734.2 933 45.6
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 7.4e-207 724.9 908 46.5
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 2.2e-206 723.4 910 46.7
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.4e-205 720.7 395 94.4
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 7.0e-205 718.4 909 47.5
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 7.7e-204 714.9 909 47.3
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 7.7e-204 714.9 862 50.0
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 8.5e-203 711.4 914 45.6
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.7e-201 705.7 905 46.7
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 2.6e-199 699.9 908 46.1
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 7.5e-199 698.4 672 56.8
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 8.3e-198 694.9 943 45.8
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 4.1e-197 692.6 908 46.3
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 5.3e-197 692.2 941 45.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.6e-193 680.6 887 46.4
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 1.4e-192 677.6 921 45.5
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 8.8e-192 674.9 935 44.1
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 2.0e-191 673.7 935 44.2
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.1e-189 666.4 896 45.0
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 5.9e-188 662.1 935 44.2
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.8e-187 659.4 904 44.6
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 3.8e-187 659.4 970 42.7
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 2.2e-182 643.7 973 41.9
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.9e-182 642.5 851 46.4
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 4.5e-180 636.0 923 43.1
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 5.0e-179 632.5 911 44.7
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 4.3e-178 629.4 908 44.7
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.9e-173 614.0 919 40.9
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 2.3e-171 607.1 650 51.4
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 4.6e-164 582.8 838 43.3
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 8.6e-163 578.6 559 56.7
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.5e-159 567.8 903 40.2
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.8e-152 544.3 555 55.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 2.6e-143 513.8 802 41.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.9e-143 511.9 698 48.9
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.0e-139 500.4 832 39.7
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.1e-133 481.9 539 49.5
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.1e-133 481.9 536 49.6
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.2e-109 399.4 465 48.0
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.6e-108 398.3 919 31.6
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 5.9e-95 353.2 441 47.6
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 2.5e-93 347.8 433 46.2
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 3.8e-86 323.9 938 29.6
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.5e-85 322.0 952 28.9
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 7.5e-82 309.7 357 50.7
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 6.8e-75 286.6 837 29.6
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 6.3e-73 280.0 291 54.0
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 3.5e-55 221.1 352 38.6
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 4.3e-53 214.2 418 33.7
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.6e-52 212.2 342 38.0
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 2.1e-52 211.8 183 56.3
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.4e-51 209.1 234 51.7
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 7.5e-50 203.4 246 48.8
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.6e-47 194.1 247 47.8
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.5e-45 189.1 323 36.5
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.1e-37 162.9 235 46.8
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 6.8e-35 153.7 349 35.5
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.3e-33 149.4 208 43.3
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 4.2e-32 144.4 140 54.3
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 5.4e-32 144.1 242 42.6
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.6e-31 141.0 198 44.4
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 7.8e-31 140.2 126 57.1
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 8.1e-28 130.2 335 31.9
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.2e-24 118.2 69 79.7
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 7.9e-23 113.6 389 23.4
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.0e-22 113.2 127 48.8
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 3.3e-21 108.2 154 44.2
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 4.0e-19 101.3 331 28.1
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 4.0e-19 101.3 331 28.1
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-18 99.8 193 37.3
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 4.5e-18 97.8 165 38.2
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 9.9e-18 96.7 92 48.9
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.2e-16 91.7 89 59.6
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.0e-15 87.4 143 43.4
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 7.9e-15 87.0 347 24.2
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 4.3e-13 81.3 149 32.9
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 2.4e-11 75.5 68 52.9
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 5.8e-10 70.9 113 37.2


User provided reference genes

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