Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 4.1e-101 371.3 179 100.0
CSS0043758 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D112848 7.9e-60 234.2 131 81.7
CSS0030016 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D110840 9.6e-58 227.3 148 76.4
CSS0001312 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D112062 1.3e-57 226.9 154 70.8
CSS0007450 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D110030 8.2e-57 224.2 158 69.0
CSS0002626 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D110390 2.4e-56 222.6 158 68.4
CSS0031423 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D110060 9.0e-56 220.7 200 60.5
CSS0015067 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D112877 2.0e-55 219.5 181 62.4
CSS0008675 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D109896 1.0e-54 217.2 130 81.5
CSS0026753 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D111485 1.7e-54 216.5 167 66.5
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 5.2e-11 72.0 40 87.5
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 8.8e-11 71.2 39 84.6
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 2.0e-10 70.1 40 85.0
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 2.6e-10 69.7 40 82.5
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 2.6e-10 69.7 40 85.0
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 2.6e-10 69.7 40 85.0
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.6e-10 69.7 39 84.6
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 3.4e-10 69.3 40 85.0
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 3.4e-10 69.3 40 85.0
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 3.4e-10 69.3 40 85.0
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 4.4e-10 68.9 40 82.5
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 5.7e-10 68.6 40 82.5
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 5.7e-10 68.6 40 82.5
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 5.7e-10 68.6 41 78.0
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 5.7e-10 68.6 40 80.0
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 5.7e-10 68.6 40 82.5
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 5.7e-10 68.6 40 85.0
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 7.5e-10 68.2 39 82.1
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 7.5e-10 68.2 37 86.5
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 7.5e-10 68.2 40 80.0
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 7.5e-10 68.2 40 80.0
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 7.5e-10 68.2 40 82.5
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 9.8e-10 67.8 40 82.5
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 9.8e-10 67.8 40 82.5
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 1.3e-09 67.4 40 80.0
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 1.3e-09 67.4 40 82.5
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 1.3e-09 67.4 40 77.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 1.7e-09 67.0 40 80.0
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 1.7e-09 67.0 40 82.5
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 1.7e-09 67.0 40 77.5
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 1.7e-09 67.0 40 77.5
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 2.2e-09 66.6 39 76.9
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 2.2e-09 66.6 40 80.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 2.2e-09 66.6 40 80.0
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 2.8e-09 66.2 40 77.5
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 2.8e-09 66.2 40 80.0
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 3.7e-09 65.9 36 83.3
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.7e-09 65.9 40 80.0
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 3.7e-09 65.9 40 77.5
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 4.9e-09 65.5 36 88.9
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 4.9e-09 65.5 40 80.0
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 4.9e-09 65.5 40 80.0
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 6.3e-09 65.1 40 77.5
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 8.3e-09 64.7 40 77.5
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 1.1e-08 64.3 40 77.5
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 1.1e-08 64.3 40 77.5
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 1.1e-08 64.3 40 77.5
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 1.1e-08 64.3 40 77.5
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 1.1e-08 64.3 40 80.0
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 1.1e-08 64.3 40 77.5
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 1.1e-08 64.3 40 77.5
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 1.4e-08 63.9 40 75.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 1.4e-08 63.9 40 75.0
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 2.4e-08 63.2 40 75.0
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 2.4e-08 63.2 36 83.3
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 2.4e-08 63.2 40 77.5
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 2.4e-08 63.2 40 77.5
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.1e-08 62.8 40 75.0
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.1e-08 62.8 40 75.0
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.1e-08 62.8 40 75.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 4.1e-08 62.4 40 75.0
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 4.1e-08 62.4 40 75.0
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 5.4e-08 62.0 40 75.0
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 5.4e-08 62.0 40 75.0
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 5.4e-08 62.0 37 73.0
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 5.4e-08 62.0 36 83.3
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 5.4e-08 62.0 40 75.0
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 9.1e-08 61.2 40 72.5
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 9.1e-08 61.2 40 72.5
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 9.1e-08 61.2 35 77.1
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 9.1e-08 61.2 40 72.5
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 1.6e-07 60.5 39 74.4
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 2.7e-07 59.7 65 46.2
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 2.7e-07 59.7 65 46.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 2.7e-07 59.7 65 46.2
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 3.5e-07 59.3 65 44.6
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 4.5e-07 58.9 63 50.8
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 7.7e-07 58.2 36 75.0
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 7.7e-07 58.2 63 42.9
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 7.7e-07 58.2 63 42.9
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 7.7e-07 58.2 40 72.5
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 7.7e-07 58.2 32 84.4
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 1.7e-06 57.0 30 90.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 1.7e-06 57.0 30 90.0
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.7e-06 57.0 63 49.2
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 2.3e-06 56.6 36 72.2
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 5.0e-06 55.5 42 69.0
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 6.6e-06 55.1 31 83.9
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 6.6e-06 55.1 30 83.3
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 8.6e-06 54.7 36 66.7
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 8.6e-06 54.7 36 63.9
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 8.6e-06 54.7 36 63.9
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 8.6e-06 54.7 36 63.9
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 8.6e-06 54.7 40 65.0
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 8.6e-06 54.7 36 63.9


User provided reference genes

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