Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 0.0e+00 1166.8 563 100.0
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 0.0e+00 1137.5 563 97.9
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.9e-311 1071.6 559 91.8
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 6.5e-310 1066.6 554 91.3
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.9e-307 1057.4 554 91.2
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 9.1e-304 1046.2 561 88.2
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 2.9e-302 1041.2 555 88.5
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.4e-301 1038.9 568 87.0
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 2.5e-301 1038.1 554 89.5
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 1.2e-300 1035.8 555 87.9
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.6e-300 1035.4 555 87.9
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 8.0e-300 1033.1 554 88.3
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.1e-298 1029.2 554 88.1
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.6e-298 1028.1 523 93.9
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.7e-297 1025.4 556 87.6
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 2.2e-297 1025.0 554 87.7
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.8e-297 1024.6 554 87.7
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.4e-296 1022.3 555 86.7
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 9.1e-296 1019.6 554 87.4
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 2.0e-295 1018.5 554 87.5
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 3.2e-293 1011.1 554 85.7
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 3.2e-293 1011.1 553 86.1
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.7e-292 1008.1 566 85.3
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 8.0e-292 1006.5 553 86.1
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 8.0e-292 1006.5 565 85.1
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 8.0e-292 1006.5 555 85.4
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.4e-291 1005.7 554 85.2
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.4e-291 1005.7 553 85.9
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 9.7e-290 999.6 558 85.1
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 9.7e-290 999.6 556 84.5
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 4.1e-288 994.2 556 84.7
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 2.7e-287 991.5 563 83.3
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.7e-287 991.5 566 83.2
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.9e-285 985.3 550 84.9
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 1.9e-285 985.3 549 84.2
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.2e-284 982.6 537 86.0
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.7e-284 980.7 555 83.6
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 8.0e-284 979.9 555 83.8
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.2e-282 976.1 548 84.1
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.4e-282 974.5 560 80.7
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 4.4e-282 974.2 555 82.0
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 7.5e-282 973.4 548 83.6
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 2.2e-281 971.8 555 81.6
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.8e-281 971.5 557 81.7
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 6.3e-281 970.3 554 82.5
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 1.8e-280 968.8 533 87.4
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.4e-280 967.2 553 83.2
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 7.0e-280 966.8 558 83.0
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.2e-279 966.1 574 79.3
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 5.9e-279 963.8 558 83.0
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 6.5e-278 960.3 571 78.5
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 8.6e-278 959.9 555 80.7
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 3.3e-277 958.0 554 80.3
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.6e-276 955.7 587 76.7
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.6e-276 955.7 567 79.0
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.6e-276 955.7 555 79.8
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 2.8e-276 954.9 555 80.2
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.8e-276 954.9 555 81.6
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.4e-275 952.6 536 85.1
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 4.0e-275 951.0 559 79.2
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 9.8e-274 946.4 551 80.2
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 4.9e-273 944.1 565 78.8
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.4e-272 942.6 557 81.0
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.8e-272 942.2 556 79.3
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 3.1e-272 941.4 535 82.8
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 2.0e-271 938.7 549 81.8
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 2.0e-271 938.7 548 79.7
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.7e-271 938.3 560 77.7
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.7e-270 935.6 544 80.9
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 2.3e-270 935.3 564 80.7
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 2.9e-270 934.9 563 76.9
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 2.9e-270 934.9 550 79.8
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.1e-269 932.9 562 76.7
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.5e-269 932.6 587 78.0
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.5e-269 932.6 552 78.8
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.2e-268 929.5 560 77.0
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.2e-268 929.5 517 84.3
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 2.1e-268 928.7 552 78.6
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.6e-268 927.9 550 78.0
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 4.0e-267 924.5 550 79.6
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 6.8e-267 923.7 560 78.0
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 6.8e-267 923.7 548 76.8
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 6.8e-267 923.7 557 77.4
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 8.9e-267 923.3 560 77.1
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.2e-266 922.9 550 79.5
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.0e-266 922.2 560 77.9
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.6e-266 921.8 562 76.7
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 3.4e-266 921.4 561 75.9
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 9.8e-266 919.8 556 77.7
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 9.2e-264 913.3 554 77.1
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.0e-262 909.8 555 78.7
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 1.7e-262 909.1 563 75.5
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.0e-262 908.3 539 81.1
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 5.0e-262 907.5 555 76.4
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 7.3e-261 903.7 556 76.6
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 2.8e-260 901.7 561 76.1
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 4.7e-260 901.0 558 78.7
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 6.2e-260 900.6 551 77.3
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 6.2e-260 900.6 551 77.5
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 6.2e-260 900.6 551 77.3
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 8.0e-260 900.2 561 75.9
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 8.0e-260 900.2 551 77.5
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.4e-259 899.4 561 75.8
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 1.8e-259 899.0 561 75.9
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 3.1e-259 898.3 551 76.6
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 5.2e-259 897.5 561 75.9
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 6.8e-259 897.1 561 75.4
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 7.5e-258 893.6 508 83.7
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.3e-257 892.9 549 79.4
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.5e-255 884.8 559 74.4
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 1.5e-253 879.4 563 73.7
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 3.6e-252 874.8 540 79.3
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 7.5e-250 867.1 544 75.9
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.9e-249 865.1 518 78.2
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 8.3e-249 863.6 495 83.0
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 5.6e-245 850.9 546 76.4
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.8e-243 844.0 516 79.3
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 8.9e-243 843.6 517 76.8
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.9e-240 835.9 554 72.2
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 6.0e-239 830.9 534 76.4
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.1e-238 827.8 553 73.2
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 2.0e-234 815.8 564 69.7
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 3.4e-226 788.5 551 69.5
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.0e-223 777.7 479 78.9
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 7.2e-200 701.0 556 63.5
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.4e-198 696.8 416 80.3
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.8e-198 696.4 569 61.9
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.3e-197 691.8 583 59.7
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 4.3e-197 691.8 581 61.1
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.4e-174 617.1 346 87.9
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 9.8e-149 531.2 315 81.6
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.7e-143 512.3 350 70.6
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 7.8e-138 495.0 278 82.4
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.9e-136 490.3 263 90.5
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 9.9e-125 451.4 324 68.8
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 9.3e-123 444.9 514 51.2
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.2e-115 419.5 294 70.7
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.1e-106 390.6 217 77.4
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 1.1e-104 384.8 302 61.6
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.1e-102 378.3 217 83.4
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 7.4e-96 355.5 272 64.7
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 6.5e-92 342.4 251 70.1
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 5.1e-81 306.2 555 34.1
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 8.2e-79 298.9 198 74.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.0e-76 292.0 201 71.1
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 6.1e-66 256.1 145 76.6
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 8.2e-63 245.7 457 31.9
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 1.6e-53 214.9 228 46.9
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 8.5e-52 209.1 125 75.2
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.2e-37 162.2 128 60.2
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.3e-35 154.1 106 60.4
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 3.6e-34 150.6 100 73.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.8e-32 143.3 106 62.3
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 2.4e-30 137.9 110 60.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.6e-26 125.2 150 48.0
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 2.0e-24 118.2 121 51.2
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.4e-22 112.1 54 85.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.1e-18 98.2 56 82.1
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 6.6e-12 76.6 43 79.1
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.4e-09 68.9 64 48.4
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 3.8e-07 60.8 71 38.0
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 3.8e-07 60.8 63 38.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 6.4e-07 60.1 70 35.7
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 6.4e-07 60.1 60 40.0
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 8.4e-07 59.7 77 29.9
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 8.4e-07 59.7 77 29.9
Gorai.004G005700 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.4e-06 58.9 150 24.0
FAN27G2732 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.4e-06 58.2 76 30.3
Nn1g05882 Nelumbo nucifera HOM05D000157 ORTHO05D005495 3.2e-06 57.8 59 35.6
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 4.2e-06 57.4 75 34.7
Os07g0631200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 4.2e-06 57.4 59 40.7
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 4.2e-06 57.4 63 36.5
ATR0326G031 Amborella trichopoda HOM05D000082 ORTHO05D014356 5.4e-06 57.0 58 37.9
Dinv03794 Davidia involucrata HOM05D000082 ORTHO05D000038 5.4e-06 57.0 58 36.2
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 7.1e-06 56.6 55 38.2
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.1e-06 56.6 55 38.2
Zm00001eb110240 Zea mays HOM05D000082 ORTHO05D000038 7.1e-06 56.6 57 38.6
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 9.3e-06 56.2 51 33.3
Gohir.A04G051300 Gossypium hirsutum HOM05D000341 ORTHO05D001197 9.3e-06 56.2 84 34.5
MBI07_g28241_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 9.3e-06 56.2 56 39.3
MBI11_g24782_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D000557 9.3e-06 56.2 139 32.4
MBI15_g38537_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 9.3e-06 56.2 56 39.3
unitig_748.g7202 Utricularia gibba HOM05D000086 ORTHO05D001065 9.3e-06 56.2 115 32.2


User provided reference genes

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