Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.5e-115 417.2 231 100.0
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.5e-115 417.2 231 100.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.1e-103 380.2 231 91.3
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 9.1e-101 370.5 231 87.4
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.2e-100 370.2 231 87.9
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 3.5e-100 368.6 231 87.4
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.3e-99 366.7 246 84.1
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 5.0e-99 364.8 231 87.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.5e-99 364.4 233 85.8
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 4.2e-98 361.7 235 86.0
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.7e-97 359.0 231 87.4
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 6.1e-97 357.8 231 83.5
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 3.0e-96 355.5 231 85.3
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 5.2e-96 354.8 231 84.4
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 8.8e-96 354.0 231 85.3
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 9.7e-95 350.5 231 83.1
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.8e-94 349.0 231 82.3
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 4.8e-94 348.2 231 85.7
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 6.3e-94 347.8 231 84.8
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 8.2e-94 347.4 231 81.8
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.1e-93 347.1 231 84.8
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.8e-93 346.3 231 83.5
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 2.4e-93 345.9 231 81.0
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 2.4e-93 345.9 232 85.3
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 3.1e-93 345.5 231 83.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 4.1e-93 345.1 231 82.3
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 5.3e-93 344.7 231 83.1
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.6e-92 343.2 231 83.1
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.6e-92 343.2 231 83.1
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.6e-92 343.2 231 80.1
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 2.0e-92 342.8 231 83.5
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 2.7e-92 342.4 232 83.2
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.5e-92 342.0 231 81.0
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 4.5e-92 341.7 232 80.6
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 4.5e-92 341.7 232 85.3
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 5.9e-92 341.3 231 84.0
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 5.9e-92 341.3 232 84.1
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.0e-91 340.5 244 80.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.3e-91 340.1 231 80.1
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.3e-91 340.1 233 82.4
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 1.7e-91 339.7 231 83.1
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.9e-91 339.0 232 79.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 2.9e-91 339.0 232 79.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 2.9e-91 339.0 232 79.7
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.9e-91 339.0 232 80.2
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.0e-91 338.2 233 84.1
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 6.5e-91 337.8 231 81.4
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 6.5e-91 337.8 232 82.3
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 6.5e-91 337.8 232 84.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 8.5e-91 337.4 231 82.7
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.9e-90 336.3 231 79.2
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.9e-90 336.3 232 82.8
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.9e-90 336.3 231 82.7
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.5e-90 335.9 232 79.3
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 3.2e-90 335.5 231 82.3
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 3.2e-90 335.5 231 78.8
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 4.2e-90 335.1 232 79.3
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 4.2e-90 335.1 232 79.3
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 4.2e-90 335.1 232 79.3
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 4.2e-90 335.1 236 79.7
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 5.5e-90 334.7 231 77.9
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.2e-89 333.6 234 81.6
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.6e-89 333.2 230 79.1
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.6e-89 333.2 235 80.0
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.1e-89 332.8 231 83.1
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 2.7e-89 332.4 233 79.0
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 2.7e-89 332.4 235 83.4
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 8.0e-89 330.9 232 78.4
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 8.0e-89 330.9 233 79.0
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 8.0e-89 330.9 233 79.0
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 8.0e-89 330.9 232 78.4
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.4e-88 330.1 235 81.3
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.8e-88 329.7 231 75.3
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.0e-88 328.9 232 78.4
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 4.0e-88 328.6 232 82.3
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 5.2e-88 328.2 234 82.5
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.2e-88 328.2 231 79.2
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.8e-88 327.8 235 82.6
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 6.8e-88 327.8 234 77.8
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.5e-87 326.6 233 79.0
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.5e-87 326.6 233 79.0
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.6e-87 325.9 232 81.0
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 2.6e-87 325.9 231 81.8
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.4e-87 325.5 235 81.3
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 5.7e-87 324.7 233 80.7
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 7.5e-87 324.3 234 81.2
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.5e-87 324.3 234 81.2
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 9.8e-87 323.9 285 64.9
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.7e-86 323.2 232 81.0
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.7e-86 323.2 236 80.1
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 2.2e-86 322.8 232 79.3
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.8e-86 321.6 231 77.9
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 4.8e-86 321.6 234 77.8
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 7.0e-85 317.8 233 73.0
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 2.0e-84 316.2 232 81.0
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 2.7e-84 315.8 231 77.1
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.5e-84 315.5 231 79.2
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 5.9e-84 314.7 233 76.8
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 7.7e-84 314.3 231 78.4
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.3e-83 313.5 233 78.1
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.7e-83 313.2 232 78.0
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 3.8e-83 312.0 231 78.4
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 5.5e-82 308.1 231 76.6
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 5.5e-82 308.1 231 71.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 5.5e-82 308.1 233 76.8
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 7.2e-82 307.8 231 76.6
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.2e-81 307.0 238 76.9
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.8e-81 305.8 251 67.7
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 6.1e-81 304.7 232 76.7
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.0e-80 303.9 231 77.1
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.0e-80 303.9 234 70.9
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.0e-80 302.0 234 70.5
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.5e-79 300.1 227 77.5
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.5e-79 300.1 234 76.1
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.5e-79 300.1 234 76.1
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 2.6e-79 299.3 231 74.0
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 3.4e-79 298.9 231 70.1
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.7e-78 296.6 235 72.8
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 4.1e-77 292.0 232 72.8
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 5.4e-77 291.6 231 71.0
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.2e-76 290.4 234 74.8
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 2.0e-76 289.7 231 72.7
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.5e-76 288.9 231 68.4
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-75 287.0 219 79.9
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 6.6e-75 284.6 232 72.0
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-73 280.0 231 72.7
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 6.1e-73 278.1 231 71.0
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.0e-72 277.3 271 62.4
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-72 277.3 231 72.3
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.2e-72 275.0 231 71.9
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.2e-72 275.0 231 71.9
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 9.8e-71 270.8 232 71.1
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.3e-70 270.4 231 70.6
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 1.9e-69 266.5 231 70.1
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.6e-68 263.5 231 69.3
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 7.8e-68 261.2 233 69.1
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.8e-68 261.2 234 69.7
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 6.6e-67 258.1 188 81.9
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.9e-64 247.7 187 81.3
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.6e-60 236.9 190 73.7
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.3e-59 233.8 231 66.7
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.9e-58 229.9 237 63.3
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 4.7e-57 225.3 162 80.2
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.7e-54 215.7 254 52.8
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.1e-53 214.2 121 89.3
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 3.5e-52 209.1 160 80.0
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-50 203.8 121 86.0
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 1.4e-48 197.2 122 81.1
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 5.2e-48 195.3 236 55.9
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.4e-45 185.3 113 84.1
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.1e-45 184.9 113 83.2
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 2.7e-44 183.0 243 53.1
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.8e-44 181.4 113 82.3
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.5e-42 177.2 156 70.5
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 8.1e-41 171.4 123 77.2
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.4e-39 165.6 97 85.6
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 7.6e-39 164.9 93 89.2
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 5.4e-37 158.7 139 69.1
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.3e-35 153.3 98 79.6
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.1e-32 144.4 81 88.9
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.4e-32 144.1 75 92.0
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 3.0e-27 126.3 90 73.3
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 5.1e-27 125.6 181 51.9
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 2.1e-25 120.2 231 41.6
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 2.8e-25 119.8 98 69.4
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.1e-25 118.2 186 44.1
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 3.1e-24 116.3 76 76.3
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 5.3e-24 115.5 146 53.4
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.2e-22 110.2 74 81.1
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 1.8e-19 100.5 228 36.8
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.9e-16 88.6 44 95.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 2.6e-15 86.7 57 73.7
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 1.1e-13 81.3 69 60.9
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.0e-11 74.7 93 52.7
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.3e-11 74.3 123 38.2
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.7e-11 71.6 94 55.3
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 1.0e-06 58.2 78 48.7


User provided reference genes

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