Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014390 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 3.2e-177 625.2 364 100.0
CSS0008621 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.7e-117 426.8 387 74.4
CSS0030941 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.7e-114 416.8 348 79.0
Actinidia03934 Actinidia chinensis HOM05D002024 ORTHO05D004352 2.1e-51 207.2 372 48.1
Rhsim03G0051100 Rhododendron simsii HOM05D002024 ORTHO05D004352 3.0e-50 203.4 375 44.8
vmacro07561 Vaccinium macrocarpon HOM05D002024 ORTHO05D004352 7.7e-46 188.7 380 41.8
Hma1.2p1_0106F.1_g051130 Hydrangea macrophylla HOM05D002024 ORTHO05D004352 9.2e-31 138.7 293 38.6
TAR623G1628 Trochodendron aralioides HOM05D002024 ORTHO05D004352 1.5e-28 131.3 380 32.4
GSVIVG01029953001 Vitis vinifera HOM05D002024 ORTHO05D004352 9.5e-28 128.6 301 35.2
QL07p017660 Quercus lobata HOM05D002024 ORTHO05D004352 6.1e-27 125.9 318 34.6
Nitab4.5_0000098g0220 Nicotiana tabacum HOM05D002024 ORTHO05D004352 4.4e-25 119.8 310 39.7
Peaxi162Scf00905g00018 Petunia axillaris HOM05D002024 ORTHO05D004352 1.4e-23 114.8 301 34.2
Duzib128G1716 Durio zibethinus HOM05D002024 ORTHO05D004352 7.0e-23 112.5 374 29.7
Potri.013G062800 Populus trichocarpa HOM05D002024 ORTHO05D004352 7.0e-23 112.5 359 33.7
Cc06_g17310 Coffea canephora HOM05D002024 ORTHO05D004352 9.2e-23 112.1 339 34.5
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 2.0e-22 110.9 372 30.4
Migut.J00772 Erythranthe guttata HOM05D002024 ORTHO05D004352 2.0e-22 110.9 295 34.6
CANSAT78G1633 Cannabis sativa HOM05D002024 ORTHO05D004352 3.5e-22 110.2 285 31.9
Gorai.007G256900 Gossypium raimondii HOM05D002024 ORTHO05D004352 3.5e-22 110.2 292 32.2
Lalb_Chr02g0157321 Lupinus albus HOM05D002024 ORTHO05D004352 1.0e-21 108.6 300 31.7
Prupe.7G010800 Prunus persica HOM05D002024 ORTHO05D004352 1.0e-21 108.6 286 34.3
Gohir.D11G242700 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.3e-21 108.2 292 31.8
Nitab4.5_0005685g0010 Nicotiana tabacum HOM05D002024 ORTHO05D004352 1.3e-21 108.2 310 40.0
Sabra13G0056000 Salix brachista HOM05D002024 ORTHO05D004352 1.3e-21 108.2 284 33.8
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.7e-21 107.8 292 31.8
MD14G1006500 Malus domestica HOM05D002024 ORTHO05D004352 1.7e-21 107.8 370 30.5
Cfa017696 Carpinus fangiana HOM05D002024 ORTHO05D004352 6.6e-21 105.9 285 31.9
Cc00_g10130 Coffea canephora HOM05D002024 ORTHO05D004352 6.6e-21 105.9 304 32.9
Atru.chr2.1480 Acer truncatum HOM05D002024 ORTHO05D004352 1.1e-20 105.1 349 31.2
Ciclev10018753m.g Citrus clementina HOM05D002024 ORTHO05D004352 1.1e-20 105.1 386 29.8
RcHm_v2.0_Chr3g0496311 Rosa chinensis HOM05D002024 ORTHO05D004352 5.6e-20 102.8 315 32.1
Haze_20441 Corylus avellana HOM05D002024 ORTHO05D004352 9.5e-20 102.1 319 31.0
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 1.6e-19 101.3 283 33.6
Hund15117 Selenicereus undatus HOM05D002024 ORTHO05D004352 2.1e-19 100.9 347 36.3
Manes.08G154300 Manihot esculenta HOM05D002024 ORTHO05D004352 3.6e-19 100.1 283 33.6
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 6.2e-19 99.4 379 29.0
MD12G1009000 Malus domestica HOM05D002024 ORTHO05D004352 1.4e-18 98.2 368 29.9
TWI60G0427 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 1.4e-18 98.2 286 32.5
Duzib177G0567 Durio zibethinus HOM05D002024 ORTHO05D004352 2.3e-18 97.4 379 28.0
VMungo0464G1034 Vigna mungo HOM05D002024 ORTHO05D004352 2.3e-18 97.4 329 29.2
SGA_v2.0_scaffold31G12789 Striga asiatica HOM05D002024 ORTHO05D004352 4.0e-18 96.7 355 29.9
Lj2g0020360 Lotus japonicus HOM05D002024 ORTHO05D004352 5.2e-18 96.3 289 30.4
Lalb_Chr06g0174121 Lupinus albus HOM05D002024 ORTHO05D004352 1.5e-17 94.7 284 28.2
AUR62038435 Chenopodium quinoa HOM05D002024 ORTHO05D004352 2.6e-17 94.0 349 36.4
Medtr6g027760 Medicago truncatula HOM05D002024 ORTHO05D004352 2.6e-17 94.0 292 29.8
Psat1g090200 Pisum sativum HOM05D002024 ORTHO05D004352 2.6e-17 94.0 315 31.1
Potri.019G038701 Populus trichocarpa HOM05D002024 ORTHO05D004352 2.6e-17 94.0 363 29.8
Cpa.g.sc161.19 Carica papaya HOM05D002024 ORTHO05D004352 3.4e-17 93.6 283 30.4
arahy.Tifrunner.gnm1.ann1.S92YTY Arachis hypogaea HOM05D002024 ORTHO05D004352 7.5e-17 92.4 301 30.9
Eucgr.A02131 Eucalyptus grandis HOM05D002024 ORTHO05D004352 7.5e-17 92.4 363 28.7
DCAR_009084 Daucus carota HOM05D002024 ORTHO05D004352 1.7e-16 91.3 289 32.5
TPR.G29868 Trifolium pratense HOM05D002024 ORTHO05D004352 4.9e-16 89.7 315 31.1
Aqoxy2G00589 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 8.3e-16 89.0 297 29.3
ECA238G4379 Erigeron canadensis HOM05D002024 ORTHO05D004352 8.3e-16 89.0 317 34.4
Ca_25685_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 1.1e-15 88.6 295 31.2
Gorai.013G195500 Gossypium raimondii HOM05D002024 ORTHO05D004352 1.1e-15 88.6 379 26.4
arahy.Tifrunner.gnm1.ann1.9M8SYH Arachis hypogaea HOM05D002024 ORTHO05D004352 1.9e-15 87.8 301 29.9
Glyma.17G187400 Glycine max HOM05D002024 ORTHO05D004352 3.2e-15 87.0 292 29.1
Phvul.004G073900 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 7.1e-15 85.9 292 28.8
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 9.2e-15 85.5 315 30.8
Sc22g0004540 Simmondsia chinensis HOM05D002024 ORTHO05D004352 9.2e-15 85.5 330 29.4
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 2.1e-14 84.3 294 27.9
EL10Ac5g11731 Beta vulgaris HOM05D002024 ORTHO05D004352 2.7e-14 84.0 320 29.7
DCAR_013482 Daucus carota HOM05D002024 ORTHO05D004352 3.5e-14 83.6 349 28.7
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.5e-14 83.6 345 30.1
AUR62041184 Chenopodium quinoa HOM05D002024 ORTHO05D004352 6.0e-14 82.8 310 35.8
Gohir.D13G167000 Gossypium hirsutum HOM05D002024 ORTHO05D004352 6.0e-14 82.8 379 25.9
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 1.0e-13 82.0 284 31.3
Gohir.A13G164100 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.0e-13 82.0 370 26.8
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.7e-13 81.3 315 30.5
Lsat_1_v5_gn_2_103580 Lactuca sativa HOM05D002024 ORTHO05D004352 1.7e-13 81.3 330 34.2
Glyma.05G089300 Glycine max HOM05D002024 ORTHO05D004352 3.0e-13 80.5 293 28.7
Gorai.013G113400 Gossypium raimondii HOM05D002024 ORTHO05D004352 6.6e-13 79.3 316 30.7
THA.LOC104804880 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 6.6e-13 79.3 291 31.6
HanXRQChr14g0453601 Helianthus annuus HOM05D002024 ORTHO05D004352 8.6e-13 79.0 311 29.3
HanXRQChr07g0197171 Helianthus annuus HOM05D002024 ORTHO05D004352 4.7e-11 73.2 328 30.2
PGSC0003DMG400020924 Solanum tuberosum HOM05D002024 ORTHO05D004352 4.7e-11 73.2 297 30.6
unitig_22.g5158 Utricularia gibba HOM05D002024 ORTHO05D004352 4.7e-11 73.2 295 27.8
CAN.G809.7 Capsicum annuum HOM05D002024 ORTHO05D004352 1.8e-10 71.2 294 28.9
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 4.0e-10 70.1 295 30.2
Solyc10g018520.1 Solanum lycopersicum HOM05D002024 ORTHO05D004352 8.9e-10 68.9 296 30.1
Ah.02g115700 Amaranthus hybridus HOM05D002024 ORTHO05D004352 1.2e-09 68.6 326 26.7
Sopen10g008230 Solanum pennellii HOM05D002024 ORTHO05D004352 2.0e-09 67.8 296 30.4
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 2.6e-09 67.4 309 31.1
PSO384G0657 Papaver somniferum HOM05D002024 ORTHO05D004352 3.4e-09 67.0 291 31.3
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 5.8e-09 66.2 277 27.8
Nn6g32382 Nelumbo nucifera HOM05D002024 ORTHO05D004352 1.3e-08 65.1 301 26.9
PSO339G0006 Papaver somniferum HOM05D002024 ORTHO05D004352 1.7e-08 64.7 322 29.2
AT5G35910 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 2.9e-08 63.9 316 27.2
Sp7g06250 Schrenkiella parvula HOM05D002024 ORTHO05D004352 8.4e-08 62.4 304 28.6
Aa31LG9G18040 Aethionema arabicum HOM05D002024 ORTHO05D004352 1.4e-07 61.6 287 27.5
ClCG04G005460 Citrullus lanatus HOM05D002024 ORTHO05D004352 1.9e-07 61.2 257 29.2
AL7G44760 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 3.2e-07 60.5 285 27.7
CARHR216730 Cardamine hirsuta HOM05D002024 ORTHO05D004352 1.6e-06 58.2 345 24.9
Gohir.A13G097300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.6e-06 58.2 115 34.8
MBI05_g12088_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D004352 2.7e-06 57.4 304 24.0
CDE10G0566 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 4.6e-06 56.6 305 26.9
Sed0002714 Sechium edule HOM05D002024 ORTHO05D004352 7.8e-06 55.8 258 28.7


User provided reference genes

Program Settings