Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.4e-51 203.8 100 100.0
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-36 156.0 100 82.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-36 156.0 100 82.0
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.8e-36 154.1 101 82.2
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.4e-35 150.6 100 80.0
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 6.0e-33 144.1 113 62.8
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-32 143.3 100 78.0
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.1e-32 141.0 100 76.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.7e-32 140.2 100 77.0
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-29 132.5 96 71.9
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.9e-27 125.2 101 62.4
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 6.4e-27 124.0 114 56.1
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.4e-26 122.9 98 61.2
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 9.3e-26 120.2 112 52.7
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.5e-25 118.2 114 55.3
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 4.6e-25 117.9 105 54.3
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 3.9e-24 114.8 105 56.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.9e-24 114.8 97 56.7
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 5.1e-24 114.4 114 54.4
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.7e-24 113.6 113 51.3
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.5e-23 112.8 113 49.6
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.9e-23 112.5 114 50.0
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 7.3e-23 110.5 113 50.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.3e-22 109.8 99 55.6
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.6e-22 109.4 100 55.0
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.1e-21 105.1 113 47.8
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.0e-21 104.8 106 50.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 6.9e-21 104.0 106 52.8
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 6.9e-21 104.0 105 50.5
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 6.9e-21 104.0 96 55.2
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 3.4e-20 101.7 102 54.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.4e-20 101.7 98 54.1
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.5e-20 101.3 100 50.0
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 4.5e-20 101.3 100 54.0
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 4.5e-20 101.3 110 47.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 4.5e-20 101.3 111 45.0
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 5.8e-20 100.9 110 48.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.8e-20 100.9 105 48.6
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 7.6e-20 100.5 97 50.5
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.3e-19 99.8 105 48.6
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.7e-19 99.4 108 47.2
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 2.2e-19 99.0 97 52.6
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 2.2e-19 99.0 101 50.5
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 6.4e-19 97.4 98 50.0
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.1e-18 96.7 94 50.0
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 2.4e-18 95.5 95 51.6
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 3.2e-18 95.1 103 46.6
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 4.2e-18 94.7 96 45.8
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 4.2e-18 94.7 100 48.0
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 5.4e-18 94.4 105 48.6
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 7.1e-18 94.0 106 47.2
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 9.3e-18 93.6 95 48.4
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 9.3e-18 93.6 108 46.3
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.2e-17 93.2 100 48.0
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.6e-17 92.8 105 47.6
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.1e-17 92.4 110 45.5
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.5e-17 91.7 95 49.5
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 4.6e-17 91.3 96 49.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 7.9e-17 90.5 96 47.9
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.9e-17 90.5 84 50.0
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.3e-16 89.7 99 48.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.3e-16 89.7 104 50.0
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.3e-16 89.0 109 44.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.3e-16 89.0 100 47.0
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.0e-16 88.6 98 45.9
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 3.0e-16 88.6 102 51.0
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 3.0e-16 88.6 100 46.0
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 3.9e-16 88.2 97 47.4
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 8.7e-16 87.0 106 43.4
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 8.7e-16 87.0 96 42.7
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.5e-15 86.3 95 49.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.5e-15 86.3 90 50.0
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.9e-15 85.9 99 47.5
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 5.6e-15 84.3 96 43.8
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 7.4e-15 84.0 109 42.2
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.3e-14 83.2 106 41.5
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.3e-14 83.2 95 43.2
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.6e-14 82.8 95 48.4
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.1e-14 82.4 110 41.8
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.8e-14 82.0 95 47.4
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.8e-14 82.0 95 47.4
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 4.8e-14 81.3 107 38.3
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.1e-14 80.5 106 39.6
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 8.1e-14 80.5 107 40.2
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-13 80.1 96 46.9
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.1e-13 80.1 99 40.4
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.4e-13 79.0 97 40.2
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 5.3e-13 77.8 100 42.0
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 6.9e-13 77.4 98 44.9
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 6.9e-13 77.4 100 40.0
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 6.9e-13 77.4 111 38.7
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 9.0e-13 77.0 95 46.3
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.5e-12 76.3 100 44.0
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.0e-12 75.9 101 39.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.6e-12 75.5 105 41.9
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 4.5e-12 74.7 86 45.3
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 7.6e-12 73.9 85 42.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.0e-11 73.6 100 39.0
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.3e-11 73.2 100 38.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.3e-11 73.2 109 37.6
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-11 73.2 105 41.0
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-11 72.8 100 38.0
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-11 72.8 102 37.3
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.7e-11 72.8 102 37.3
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.9e-11 72.0 108 38.9
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 4.9e-11 71.2 94 40.4
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 6.5e-11 70.9 86 44.2
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 8.4e-11 70.5 66 54.5
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 8.4e-11 70.5 91 42.9
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-10 70.1 104 38.5
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.1e-10 70.1 97 36.1
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.1e-10 70.1 56 57.1
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.4e-10 69.7 101 40.6
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 2.5e-10 68.9 101 37.6
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 3.2e-10 68.6 97 38.1
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 5.5e-10 67.8 97 36.1
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 5.5e-10 67.8 97 36.1
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 5.5e-10 67.8 97 36.1
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.1e-10 67.4 104 39.4
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.6e-09 66.2 100 38.0
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.6e-09 66.2 101 36.6
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.3e-08 63.2 103 35.9
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.9e-08 61.6 104 42.3
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 7.4e-07 57.4 96 34.4
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.6e-06 56.2 75 42.7
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.6e-06 56.2 85 32.9


User provided reference genes

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