Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.5e-197 693.0 735 100.0
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.5e-186 657.1 738 97.6
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.0e-97 362.1 397 77.8
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 1.8e-97 361.3 213 88.7
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.7e-97 359.0 208 91.8
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.7e-97 359.0 208 91.8
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 9.6e-96 355.5 209 89.0
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 9.6e-96 355.5 212 87.7
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.8e-95 354.0 214 86.0
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.8e-95 354.0 213 85.9
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 4.8e-95 353.2 210 87.1
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 4.8e-95 353.2 214 85.0
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.8e-94 351.3 212 85.4
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 3.1e-94 350.5 213 86.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 9.0e-94 349.0 260 80.8
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.5e-93 348.2 215 85.6
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 2.6e-93 347.4 209 86.1
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.6e-93 347.4 216 84.3
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 2.6e-93 347.4 215 86.5
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 2.6e-93 347.4 215 84.2
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 5.8e-93 346.3 224 83.9
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 5.8e-93 346.3 213 84.5
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 7.6e-93 345.9 215 84.7
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 7.6e-93 345.9 212 84.9
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.0e-92 345.5 218 83.0
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.7e-92 344.7 215 83.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 3.8e-92 343.6 212 83.5
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 4.9e-92 343.2 258 78.3
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 6.5e-92 342.8 215 83.3
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 6.5e-92 342.8 210 85.7
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 8.4e-92 342.4 210 86.2
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.9e-91 341.3 212 84.0
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.5e-91 340.9 208 85.6
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.2e-91 340.5 214 85.0
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 4.2e-91 340.1 215 83.3
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 5.5e-91 339.7 214 82.7
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 5.5e-91 339.7 207 86.5
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 5.5e-91 339.7 218 81.7
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 7.1e-91 339.3 216 81.9
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 7.1e-91 339.3 213 82.6
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 7.1e-91 339.3 211 84.8
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 9.3e-91 339.0 212 84.4
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 2.1e-90 337.8 214 82.2
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 2.1e-90 337.8 215 81.9
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 2.1e-90 337.8 205 86.3
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 2.1e-90 337.8 215 82.8
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 3.5e-90 337.0 216 81.5
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 3.5e-90 337.0 209 85.2
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.5e-90 337.0 217 82.9
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 3.5e-90 337.0 214 82.7
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 4.6e-90 336.7 216 81.5
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 4.6e-90 336.7 216 81.5
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.6e-90 336.7 217 82.9
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.6e-90 336.7 212 83.5
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.6e-90 336.7 217 81.6
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.6e-90 336.7 217 82.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 6.0e-90 336.3 218 81.7
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.0e-89 335.5 209 84.7
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 1.3e-89 335.1 218 80.7
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 2.3e-89 334.3 213 82.6
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 3.0e-89 334.0 210 83.8
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.7e-89 332.8 217 82.0
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 8.7e-89 332.4 214 81.8
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 8.7e-89 332.4 216 81.9
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.9e-88 331.3 208 82.7
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.9e-88 331.3 217 83.4
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 2.5e-88 330.9 214 81.3
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.5e-88 330.9 216 80.1
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 3.3e-88 330.5 262 77.9
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.3e-88 330.5 260 75.4
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 4.3e-88 330.1 214 81.3
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 4.3e-88 330.1 216 80.6
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 4.3e-88 330.1 208 83.2
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 2.2e-87 327.8 259 78.8
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 3.7e-87 327.0 214 80.8
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 3.7e-87 327.0 214 80.8
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.4e-86 325.1 209 82.8
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 5.3e-86 323.2 223 78.0
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 5.3e-86 323.2 216 79.6
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 7.7e-85 319.3 202 83.7
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 3.8e-84 317.0 218 76.6
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 8.5e-84 315.8 195 84.6
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.2e-83 313.9 196 85.2
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 3.2e-83 313.9 252 71.0
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.5e-83 313.2 215 75.3
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 3.6e-82 310.5 216 76.9
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 3.0e-81 307.4 207 77.8
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.1e-81 306.6 207 77.3
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 8.8e-81 305.8 184 87.5
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.0e-80 304.7 218 73.4
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 5.7e-80 303.1 213 75.6
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 7.4e-80 302.8 198 82.8
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.5e-75 287.7 179 82.7
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 2.1e-74 284.6 186 82.8
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 8.8e-73 279.3 184 79.3
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.6e-72 277.7 214 66.4
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 2.2e-71 274.6 225 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 5.3e-70 270.0 203 67.0
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 7.7e-69 266.2 200 72.5
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 4.2e-67 260.4 210 65.7
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 8.0e-66 256.1 196 66.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.4e-65 255.4 190 68.9
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.8e-63 247.7 188 72.9
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 1.6e-61 241.9 162 80.9
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.6e-58 231.9 171 74.9
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.0e-57 229.2 177 72.3
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 6.5e-52 209.9 195 60.0
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 9.8e-40 169.5 150 59.3
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 8.0e-34 149.8 94 83.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 9.2e-30 136.3 115 58.3
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.7e-28 132.1 103 72.8
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 7.3e-27 126.7 77 83.1
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 4.0e-25 120.9 189 39.7
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 2.0e-24 118.6 75 81.3
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 4.9e-23 114.0 82 74.4
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 7.1e-22 110.2 212 34.0
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 4.6e-21 107.5 64 82.8
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 6.0e-21 107.1 63 85.7
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.7e-20 105.5 63 82.5
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 1.1e-17 96.3 56 82.1
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 2.0e-16 92.0 180 36.7
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 4.4e-16 90.9 97 59.8
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.4e-16 90.9 56 75.0
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.4e-14 85.9 168 35.7
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 1.4e-14 85.9 63 73.0
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.4e-14 85.1 109 45.9
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.2e-13 82.8 100 42.0
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 1.2e-13 82.8 100 42.0
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 5.1e-12 77.4 77 57.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 5.1e-12 77.4 159 35.8
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 5.2e-09 67.4 63 63.5
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 1.7e-07 62.4 151 26.5
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.7e-07 62.4 36 80.6
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 2.9e-07 61.6 35 80.0
QL04p035096 Quercus lobata HOM05D005846 ORTHO05D007369 9.3e-06 56.6 29 89.7


User provided reference genes

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