Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 4.0e-154 548.5 377 100.0
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 4.0e-154 548.5 377 100.0
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 2.4e-119 433.0 371 86.5
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 5.4e-111 405.2 382 83.5
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.1e-108 397.5 378 77.5
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.1e-108 397.5 350 85.4
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 7.4e-108 394.8 379 81.8
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 3.6e-107 392.5 378 78.3
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.8e-107 392.1 378 77.5
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 5.3e-106 388.7 379 77.8
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.5e-105 387.1 377 78.8
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 4.9e-104 382.1 377 79.8
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.7e-102 376.3 378 77.0
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 3.0e-101 372.9 378 60.3
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 3.9e-101 372.5 377 77.2
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.1e-101 372.1 379 75.2
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 5.1e-101 372.1 378 60.3
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.7e-101 371.7 377 76.9
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 8.7e-101 371.3 378 75.4
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 1.5e-100 370.5 378 75.1
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 2.5e-100 369.8 406 62.6
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.5e-100 369.8 378 67.2
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 2.5e-100 369.8 378 76.7
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.3e-100 369.4 378 75.1
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.3e-100 369.0 378 66.9
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.6e-99 367.1 378 75.1
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 2.8e-99 366.3 378 75.7
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.7e-99 365.9 379 75.5
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 6.2e-99 365.2 379 76.0
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.4e-98 364.0 379 74.7
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.8e-98 363.6 381 74.0
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 5.3e-98 362.1 379 75.2
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 1.2e-97 360.9 378 76.5
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.2e-97 360.9 380 75.0
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.5e-97 360.5 400 72.0
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.6e-97 359.8 366 76.2
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.6e-97 359.8 379 75.2
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 3.4e-97 359.4 378 74.1
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 3.4e-97 359.4 337 80.4
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 5.8e-97 358.6 377 74.3
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 5.8e-97 358.6 345 78.3
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 3.8e-96 355.9 378 73.8
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 6.5e-96 355.1 369 77.2
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.9e-95 353.6 380 75.5
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 2.5e-95 353.2 373 77.2
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 5.5e-95 352.1 382 74.3
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 9.3e-95 351.3 377 74.0
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.2e-94 350.9 380 73.4
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.2e-94 350.9 383 72.6
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 2.1e-94 350.1 379 66.0
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.3e-93 347.4 376 75.5
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.0e-93 346.3 375 73.9
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 3.9e-93 345.9 378 73.5
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 5.1e-93 345.5 379 74.9
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 8.7e-93 344.7 378 75.1
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 2.5e-92 343.2 369 72.6
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.3e-92 342.8 379 74.4
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 4.3e-92 342.4 378 75.1
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.3e-91 340.9 374 72.5
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 9.0e-90 334.7 382 71.7
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 2.0e-89 333.6 378 73.5
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.0e-88 331.3 373 75.6
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 2.9e-88 329.7 371 71.2
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 3.8e-88 329.3 361 74.0
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.8e-88 329.3 380 72.4
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 3.2e-87 326.2 359 77.7
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 3.2e-87 326.2 381 71.1
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.6e-86 322.8 389 68.9
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 9.0e-82 308.1 282 86.5
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.0e-80 304.7 388 70.1
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 3.2e-79 299.7 371 70.1
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.7e-78 296.6 392 67.6
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 4.6e-78 295.8 489 40.3
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 3.0e-77 293.1 380 69.2
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 8.8e-77 291.6 351 72.9
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 2.0e-76 290.4 371 69.3
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 2.6e-76 290.0 346 72.0
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 3.3e-76 289.7 367 71.9
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 5.7e-76 288.9 374 66.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 5.7e-76 288.9 374 66.8
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.3e-75 287.7 351 72.1
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.3e-75 287.7 379 67.8
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 3.7e-75 286.2 374 66.6
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 6.3e-75 285.4 338 63.6
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.8e-74 283.9 365 67.4
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 4.5e-73 279.3 383 66.6
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.3e-72 277.7 382 67.3
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 1.7e-72 277.3 380 67.6
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 1.7e-72 277.3 361 67.3
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 8.5e-72 275.0 383 45.2
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.4e-71 274.2 383 66.1
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.9e-71 273.9 383 66.3
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 3.2e-71 273.1 324 73.1
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 4.2e-71 272.7 373 66.0
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 3.6e-70 269.6 338 70.4
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 4.7e-70 269.2 382 64.4
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 3.3e-68 263.1 385 66.2
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 7.0e-66 255.4 382 62.3
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 1.3e-64 251.1 383 61.4
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 3.8e-64 249.6 377 63.4
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 6.5e-64 248.8 324 72.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 6.5e-64 248.8 393 54.5
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.6e-62 244.2 392 53.6
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 6.1e-62 242.3 274 75.5
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.3e-61 240.4 333 73.0
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.8e-58 230.7 364 62.1
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 3.8e-56 223.0 331 68.9
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 5.0e-56 222.6 368 62.2
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 4.2e-55 219.5 381 58.0
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 6.8e-53 212.2 312 65.7
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.2e-52 211.5 379 58.0
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 2.0e-52 210.7 170 67.1
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 9.8e-52 208.4 132 90.2
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 5.9e-49 199.1 181 63.0
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.6e-46 191.0 305 63.6
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.6e-46 189.9 132 83.3
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 3.6e-46 189.9 182 63.2
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 2.6e-44 183.7 379 53.3
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 5.7e-44 182.6 170 61.8
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.1e-42 178.3 132 80.3
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.4e-42 177.9 362 57.2
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 1.1e-39 168.3 372 54.0
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 2.5e-39 167.2 311 58.8
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 3.6e-38 163.3 306 56.5
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.1e-29 133.7 132 65.9
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 4.4e-28 129.8 156 48.1
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 5.8e-28 129.4 115 68.7
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.9e-26 124.4 318 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 5.4e-26 122.9 240 63.3
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 3.0e-24 117.1 255 59.6
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 9.8e-20 102.1 228 54.8
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 6.4e-19 99.4 96 57.3
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 1.7e-16 91.3 415 44.6
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 9.5e-15 85.5 84 73.8
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.3e-13 80.9 64 62.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 4.0e-13 80.1 55 70.9
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 2.0e-12 77.8 55 69.1


User provided reference genes

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