Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 8.0e-100 367.1 184 100.0
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.8e-91 339.3 180 91.1
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.8e-91 339.3 184 88.6
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 3.1e-91 338.6 184 91.8
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 5.2e-91 337.8 184 90.8
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 5.2e-91 337.8 184 90.8
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.2e-90 336.7 184 88.6
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.0e-90 335.9 184 89.1
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 4.4e-90 334.7 184 91.3
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 5.8e-90 334.3 182 89.6
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.4e-88 328.9 184 87.5
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.6e-87 326.2 184 85.9
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 2.7e-87 325.5 184 85.3
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 3.5e-87 325.1 184 85.3
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 7.8e-87 323.9 184 84.8
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 1.0e-86 323.6 184 86.4
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.0e-86 323.6 184 86.4
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.3e-86 323.2 184 87.0
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.0e-86 321.2 184 85.3
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 8.6e-86 320.5 178 88.2
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.6e-86 320.5 184 84.8
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.5e-85 319.7 184 84.2
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.9e-85 319.3 184 84.2
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.5e-85 318.9 184 84.2
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 3.3e-85 318.5 183 85.8
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 5.6e-85 317.8 182 84.1
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 7.3e-85 317.4 182 84.6
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.2e-84 316.6 182 84.1
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 2.1e-84 315.8 184 83.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 83.2
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 83.2
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.6e-84 315.1 184 81.5
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.3e-83 312.4 182 83.0
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 4.0e-83 311.6 184 79.9
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 4.0e-83 311.6 184 82.1
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 6.8e-83 310.8 182 83.5
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 6.8e-83 310.8 182 82.4
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 8.9e-83 310.5 184 81.5
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 8.9e-83 310.5 184 81.5
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 8.9e-83 310.5 182 81.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 8.9e-83 310.5 182 82.4
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.2e-82 310.1 184 81.0
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.2e-82 310.1 177 85.3
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-82 310.1 177 85.3
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.2e-82 310.1 182 82.4
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.0e-82 309.3 184 82.6
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 2.0e-82 309.3 184 82.1
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.0e-82 309.3 181 81.8
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 81.0
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 81.0
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.4e-82 308.5 177 82.5
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 4.4e-82 308.1 184 81.5
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 5.8e-82 307.8 181 81.8
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.8e-82 307.0 184 79.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.3e-81 306.6 184 79.3
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.3e-81 306.6 185 81.1
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 81.5
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 81.0
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.2e-81 305.8 184 79.9
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 4.9e-81 304.7 184 80.4
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.9e-81 304.7 184 81.0
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 4.9e-81 304.7 184 79.9
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.4e-81 304.3 184 78.3
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.4e-81 304.3 184 78.3
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 6.4e-81 304.3 183 79.8
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.9e-80 302.8 184 80.4
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.9e-80 302.8 184 78.3
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.4e-80 302.4 179 79.3
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.4e-80 302.4 184 78.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 5.4e-80 301.2 179 81.0
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 5.4e-80 301.2 184 78.8
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 7.1e-80 300.8 184 78.3
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 7.1e-80 300.8 179 82.1
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.2e-79 300.1 184 78.3
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.1e-79 299.3 182 80.2
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 3.5e-79 298.5 178 80.3
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 6.0e-79 297.7 184 76.1
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.0e-78 297.0 181 76.8
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.3e-78 295.8 182 79.1
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.1e-78 294.7 182 76.4
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.1e-78 294.7 182 76.4
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 6.6e-78 294.3 184 76.6
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.6e-78 294.3 182 76.4
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 6.6e-78 294.3 177 80.2
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.1e-77 293.5 184 76.6
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.1e-77 293.5 184 77.7
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.2e-76 290.0 179 77.1
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.6e-76 289.7 178 77.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.1e-76 289.3 177 77.4
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.8e-76 288.9 185 76.8
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.7e-76 288.1 184 74.5
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 4.7e-76 288.1 184 74.5
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 8.1e-76 287.3 185 75.7
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.1e-75 287.0 183 76.0
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.1e-75 287.0 179 74.3
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 2.3e-75 285.8 184 75.0
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 4.0e-75 285.0 184 71.7
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 4.0e-75 285.0 184 75.0
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 74.2
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 74.2
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 74.2
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 71.4
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 73.9
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.0e-74 282.7 185 75.1
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 73.6
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 73.6
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 73.4
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 4.9e-73 278.1 184 73.9
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 6.4e-73 277.7 193 72.0
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.9e-72 276.2 184 75.0
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 2.4e-72 275.8 179 76.5
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.6e-71 273.1 170 78.8
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 2.1e-71 272.7 185 69.7
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.7e-71 272.3 180 71.1
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 6.0e-71 271.2 177 70.1
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 7.8e-71 270.8 185 73.5
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.0e-70 270.4 185 69.7
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.3e-70 270.0 185 68.6
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 2.3e-70 269.2 187 69.5
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.9e-69 266.2 182 70.9
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.6e-68 263.1 185 67.0
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 2.8e-68 262.3 182 68.1
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 4.7e-68 261.5 182 69.2
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.4e-67 260.0 180 70.6
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 5.2e-67 258.1 179 69.8
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 5.8e-66 254.6 178 68.5
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 7.6e-66 254.2 178 68.5
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.9e-61 239.6 186 62.4
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 4.3e-61 238.4 186 66.7
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 4.9e-57 224.9 182 63.2
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 8.4e-57 224.2 165 70.3
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.9e-56 223.0 179 60.9
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.4e-56 222.6 187 61.0
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.1e-48 197.2 184 56.5
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.4e-48 194.9 121 75.2
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-46 190.3 115 78.3
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 9.6e-45 184.1 197 51.8
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.5e-42 176.8 159 54.7
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 3.5e-39 165.6 179 43.6
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 5.5e-32 141.7 109 69.7
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.4e-27 126.3 99 63.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.0e-25 120.9 76 76.3
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 1.2e-18 97.4 164 35.4
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 3.6e-15 85.9 57 75.4
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 8.8e-14 81.3 59 66.1
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 2.0e-13 80.1 55 69.1
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.2e-10 70.9 41 80.5


User provided reference genes

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