Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013479 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D004091 1.3e-38 162.5 77 100.0
Rhsim05G0101100 Rhododendron simsii HOM05D000280 ORTHO05D004091 4.1e-13 77.8 44 79.5
FAN18G4332 Fragaria x ananassa HOM05D000280 ORTHO05D004091 5.3e-13 77.4 75 50.7
SalBow1G7158 Salvia bowleyana HOM05D000280 ORTHO05D004091 5.9e-12 73.9 39 84.6
CSS0004756 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D004091 7.7e-12 73.6 38 86.8
Ca_25307_v3 Cicer arietinum L. HOM05D000280 ORTHO05D004091 7.7e-12 73.6 38 86.8
Lj2A266G59 Lonicera japonica HOM05D000280 ORTHO05D004091 7.7e-12 73.6 38 86.8
Lj4g0000794 Lotus japonicus HOM05D000280 ORTHO05D004091 7.7e-12 73.6 38 86.8
MD06G1224200 Malus domestica HOM05D000280 ORTHO05D004091 7.7e-12 73.6 38 86.8
Sabra13G0080300 Salix brachista HOM05D000280 ORTHO05D004091 7.7e-12 73.6 38 86.8
Nitab4.5_0009501g0020 Nicotiana tabacum HOM05D000280 ORTHO05D004091 1.3e-11 72.8 38 86.8
Atru.chr9.943 Acer truncatum HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Actinidia35108 Actinidia chinensis HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
arahy.Tifrunner.gnm1.ann1.EBY6Y5 Arachis hypogaea HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
arahy.Tifrunner.gnm1.ann1.K2X0H0 Arachis hypogaea HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
CANSAT80G0534 Cannabis sativa HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Cpa.g.sc3.424 Carica papaya HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Ca_17221_v3 Cicer arietinum L. HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
ClCG04G010790 Citrullus lanatus HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
MELO3C002118.2 Cucumis melo HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
CsaV3_1G007000 Cucumis sativus L. HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
FAN08G0202 Fragaria x ananassa HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Glyma.05G243400 Glycine max HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Glyma.08G051200 Glycine max HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Gohir.D11G003700 Gossypium hirsutum HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Gorai.007G004700 Gossypium raimondii HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Manes.06G008800 Manihot esculenta HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Manes.14G168200 Manihot esculenta HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Medtr8g106700 Medicago truncatula HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Nitab4.5_0006584g0010 Nicotiana tabacum HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Phvul.002G327100 Phaseolus vulgaris HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Potri.019G062500 Populus trichocarpa HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Sed0003870 Sechium edule HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
unitig_32.g11845 Utricularia gibba HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
VMungo0251G3634 Vigna mungo HOM05D000280 ORTHO05D004091 1.7e-11 72.4 38 84.2
Actinidia37887 Actinidia chinensis HOM05D000280 ORTHO05D004091 2.2e-11 72.0 38 81.6
ATR0019G060 Amborella trichopoda HOM05D000280 ORTHO05D004091 2.2e-11 72.0 38 81.6
Ciclev10008034m.g Citrus clementina HOM05D000280 ORTHO05D004091 2.2e-11 72.0 38 81.6
Gohir.A11G004200 Gossypium hirsutum HOM05D000280 ORTHO05D004091 2.2e-11 72.0 38 81.6
Medtr6g080420 Medicago truncatula HOM05D000280 ORTHO05D004091 2.2e-11 72.0 38 84.2
Psat1g033800 Pisum sativum HOM05D000280 ORTHO05D004091 2.2e-11 72.0 38 84.2
Prupe.5G229200 Prunus persica HOM05D000280 ORTHO05D004091 2.2e-11 72.0 38 84.2
Thecc.03G049400 Theobroma cacao HOM05D000280 ORTHO05D004091 2.2e-11 72.0 38 81.6
FAN04G2055 Fragaria x ananassa HOM05D000280 ORTHO05D004091 2.9e-11 71.6 38 84.2
FvH4_5g17000 Fragaria vesca HOM05D000280 ORTHO05D004091 3.8e-11 71.2 38 81.6
MD14G1233200 Malus domestica HOM05D000280 ORTHO05D004091 3.8e-11 71.2 38 84.2
Os04g0270100 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D004091 3.8e-11 71.2 38 81.6
Potri.013G093400 Populus trichocarpa HOM05D000280 ORTHO05D004091 3.8e-11 71.2 38 84.2
TPR.G12926 Trifolium pratense HOM05D000280 ORTHO05D004091 3.8e-11 71.2 38 81.6
TPR.G21229 Trifolium pratense HOM05D000280 ORTHO05D004091 3.8e-11 71.2 38 81.6
arahy.Tifrunner.gnm1.ann1.WFT48X Arachis hypogaea HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
BcaB07g31832 Brassica carinata HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
BcaB07g31834 Brassica carinata HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
BcaC03g13837 Brassica carinata HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
BcaC05g25700 Brassica carinata HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
C05p16390 Brassica napus HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
BolC2t07103H Brassica oleracea HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
BolC5t30336H Brassica oleracea HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
CAN.G1129.35 Capsicum annuum HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Migut.G00022 Erythranthe guttata HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Lsat_1_v5_gn_2_20221 Lactuca sativa HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Oeu014373.1 Olea europaea HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Oeu041169.1 Olea europaea HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Os02g0456500 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Peaxi162Scf00332g00031 Petunia axillaris HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Peaxi162Scf00683g00027 Petunia axillaris HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Psat7g004080 Pisum sativum HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Sed0018744 Sechium edule HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
Sc06g0005880 Simmondsia chinensis HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
PGSC0003DMG400005660 Solanum tuberosum HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
SGA_v2.0_scaffold157G37360 Striga asiatica HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
THA.LOC104813913 Tarenaya hassleriana HOM05D000280 ORTHO05D004091 5.0e-11 70.9 38 81.6
PSO017G0192 Papaver somniferum HOM05D000280 ORTHO05D004091 6.5e-11 70.5 38 81.6
PSO170G0215 Papaver somniferum HOM05D000280 ORTHO05D004091 6.5e-11 70.5 38 81.6
CDE05G1377 Ceratophyllum demersum HOM05D000280 ORTHO05D004091 8.5e-11 70.1 38 81.6
CDE05G1703 Ceratophyllum demersum HOM05D000280 ORTHO05D004091 8.5e-11 70.1 38 81.6
Lalb_Chr05g0221891 Lupinus albus HOM05D000280 ORTHO05D004091 8.5e-11 70.1 38 81.6
Lalb_Chr09g0330591 Lupinus albus HOM05D000280 ORTHO05D004091 8.5e-11 70.1 38 81.6
QL10p027384 Quercus lobata HOM05D000280 ORTHO05D004091 8.5e-11 70.1 38 81.6
Sabra19G0075800 Salix brachista HOM05D000280 ORTHO05D004091 8.5e-11 70.1 38 81.6
Sabra19G0081000 Salix brachista HOM05D000280 ORTHO05D004091 8.5e-11 70.1 38 81.6
AagrBONN_evm.TU.Sc2ySwM_368.1616 Anthoceros agrestis HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 81.6
AT1G18070 Arabidopsis thaliana HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 78.9
MSTRG.10176 Avicennia marina HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 81.6
CARHR018650 Cardamine hirsuta HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 78.9
Cc04_g06660 Coffea canephora HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 81.6
ECA233G2375 Erigeron canadensis HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 78.9
RcHm_v2.0_Chr7g0178871 Rosa chinensis HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 81.6
SEGI_30585 Sequoiadendron giganteum HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 81.6
Zm00001eb086880 Zea mays HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 81.6
Zm00001eb420170 Zea mays HOM05D000280 ORTHO05D004091 1.1e-10 69.7 38 81.6
Aqoxy6G00143 Aquilegia oxysepala HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 78.9
A06p14120 Brassica napus HOM05D000013 ORTHO05D004091 1.4e-10 69.3 38 78.9
BraA06t24542Z Brassica rapa HOM05D000013 ORTHO05D004091 1.4e-10 69.3 38 78.9
CAN.G423.19 Capsicum annuum HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
DCAR_015168 Daucus carota HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Eucgr.B00852 Eucalyptus grandis HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Eucgr.K02259 Eucalyptus grandis HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Gohir.A09G174400 Gossypium hirsutum HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Gohir.D09G171300 Gossypium hirsutum HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Gorai.006G193100 Gossypium raimondii HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Hma1.2p1_1257F.1_g270840 Hydrangea macrophylla HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Nn1g08543 Nelumbo nucifera HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
PGR044G1629 Punica granatum HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 78.9
Rhsim06G0060300 Rhododendron simsii HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Sp1g16090 Schrenkiella parvula HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 78.9
Solyc06g069020.4 Solanum lycopersicum HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
Sopen06g026310 Solanum pennellii HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
TWI60G0475 Tripterygium wilfordii HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
TAR376G0815 Trochodendron aralioides HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
unitig_46.g18702 Utricularia gibba HOM05D000280 ORTHO05D004091 1.4e-10 69.3 38 81.6
AL1G30430 Arabidopsis lyrata HOM05D000280 ORTHO05D004091 2.5e-10 68.6 38 76.3
BcaC07g38908 Brassica carinata HOM05D000280 ORTHO05D004091 2.5e-10 68.6 38 76.3
C08p18340 Brassica napus HOM05D000280 ORTHO05D004091 2.5e-10 68.6 38 76.3
BolC8t49468H Brassica oleracea HOM05D000280 ORTHO05D004091 2.5e-10 68.6 38 76.3
Carub.0001s1774 Capsella rubella HOM05D000280 ORTHO05D004091 2.5e-10 68.6 38 76.3
Lalb_Chr16g0387211 Lupinus albus HOM05D000280 ORTHO05D004091 2.5e-10 68.6 38 78.9
SHI19014 Sapria himalayana HOM05D000280 ORTHO05D004091 2.5e-10 68.6 38 76.3
Nitab4.5_0001194g0150 Nicotiana tabacum HOM05D000280 ORTHO05D004091 3.2e-10 68.2 38 78.9
Nitab4.5_0012340g0020 Nicotiana tabacum HOM05D000280 ORTHO05D004091 3.2e-10 68.2 38 78.9
THA.LOC104812160 Tarenaya hassleriana HOM05D000280 ORTHO05D004091 3.2e-10 68.2 38 78.9
Aqoxy3G02712 Aquilegia oxysepala HOM05D000280 ORTHO05D004091 4.2e-10 67.8 38 76.3
CiPaw.16G090500 Carya illinoinensis HOM05D000280 ORTHO05D004091 4.2e-10 67.8 38 78.9
Hund00112 Selenicereus undatus HOM05D000280 ORTHO05D004091 4.2e-10 67.8 38 78.9
vmacro06077 Vaccinium macrocarpon HOM05D000280 ORTHO05D004091 4.2e-10 67.8 38 78.9
vmacro16427 Vaccinium macrocarpon HOM05D000280 ORTHO05D004091 4.2e-10 67.8 39 79.5
Mapoly0103s0007 Marchantia polymorpha HOM05D000280 ORTHO05D004091 5.5e-10 67.4 38 78.9
Ah.05g170430 Amaranthus hybridus HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 78.9
BcaC07g41346 Brassica carinata HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 76.3
A09p60110 Brassica napus HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 76.3
C08p43550 Brassica napus HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 76.3
BolC8t51901H Brassica oleracea HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 76.3
BraA09t41380Z Brassica rapa HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 76.3
Thhalv10007335m.g Eutrema salsugineum HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 76.3
HanXRQChr12g0366401 Helianthus annuus HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 78.9
HanXRQChr17g0552391 Helianthus annuus HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 78.9
PGR083G2432 Punica granatum HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 76.3
HPP92_016191 Vanilla planifolia HOM05D000280 ORTHO05D004091 7.2e-10 67.0 38 76.3
Aa31LG4G4010 Aethionema arabicum HOM05D000280 ORTHO05D004091 9.4e-10 66.6 38 73.7
A08p30570 Brassica napus HOM05D000280 ORTHO05D004091 9.4e-10 66.6 38 73.7
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 9.4e-10 66.6 38 73.7
DCAR_011380 Daucus carota HOM05D000280 ORTHO05D004091 9.4e-10 66.6 38 78.9
MCO03G493 Micromonas commoda HOM05D000280 ORTHO05D004091 9.4e-10 66.6 38 73.7
Carub.0001s1984 Capsella rubella HOM05D000280 ORTHO05D004091 1.2e-09 66.2 38 73.7
Duzib084G0982 Durio zibethinus HOM05D000280 ORTHO05D004091 1.2e-09 66.2 38 78.9
Rhsim12G0140200 Rhododendron simsii HOM05D000280 ORTHO05D004091 1.2e-09 66.2 38 78.9
Sc04g0002400 Simmondsia chinensis HOM05D000280 ORTHO05D004091 1.6e-09 65.9 38 73.7
Sc04g0003190 Simmondsia chinensis HOM05D000280 ORTHO05D004091 1.6e-09 65.9 38 73.7
Aqoxy5G04055 Aquilegia oxysepala HOM05D000280 ORTHO05D004091 3.6e-09 64.7 38 73.7
EL10Ac2g04880 Beta vulgaris HOM05D000280 ORTHO05D004091 3.6e-09 64.7 38 76.3
EL10Ac8g20225 Beta vulgaris HOM05D000280 ORTHO05D004091 3.6e-09 64.7 38 76.3
AUR62013389 Chenopodium quinoa HOM05D000280 ORTHO05D004091 3.6e-09 64.7 38 76.3
AUR62038540 Chenopodium quinoa HOM05D000280 ORTHO05D004091 3.6e-09 64.7 38 76.3
Dinv15400 Davidia involucrata HOM05D000280 ORTHO05D004091 3.6e-09 64.7 38 76.3
Dinv26365 Davidia involucrata HOM05D000280 ORTHO05D004091 3.6e-09 64.7 38 76.3
Pp3c27_2160 Physcomitrium patens HOM05D000280 ORTHO05D004091 3.6e-09 64.7 38 76.3
Cre06.g284750 Chlamydomonas reinhardtii HOM05D000280 ORTHO05D004091 6.1e-09 63.9 38 71.1
arahy.Tifrunner.gnm1.ann1.L04U7Y Arachis hypogaea HOM05D000280 ORTHO05D004091 1.0e-08 63.2 41 65.9
CBR_g45513 Chara braunii HOM05D000280 ORTHO05D004091 1.0e-08 63.2 38 68.4
SMO239G0009 Selaginella moellendorffii HOM05D000280 ORTHO05D004091 1.4e-08 62.8 38 73.7
PRCOL_00006751 Prasinoderma coloniale HOM05D000280 ORTHO05D004091 3.0e-08 61.6 38 68.4
CBR_g45510 Chara braunii HOM05D000280 ORTHO05D004091 2.0e-07 58.9 38 68.4
ECA238G4744 Erigeron canadensis HOM05D000280 ORTHO05D004091 2.6e-07 58.5 38 68.4
PSO210G3797 Papaver somniferum HOM05D000280 ORTHO05D004091 2.6e-07 58.5 38 68.4


User provided reference genes

Program Settings