Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-254 882.9 432 100.0
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.0e-201 704.5 474 78.9
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.7e-175 618.2 478 70.9
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.1e-143 511.1 324 81.8
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.2e-131 472.6 540 50.9
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.8e-116 422.5 480 51.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.4e-116 421.8 480 51.5
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 8.1e-111 404.8 475 50.7
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 4.2e-107 392.5 481 47.8
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 3.8e-100 369.4 477 47.4
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 8.2e-95 351.7 478 45.4
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.4e-91 340.9 479 45.3
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.1e-90 337.0 479 44.1
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 5.1e-89 332.4 477 43.2
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.3e-88 329.7 480 43.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 5.7e-88 328.9 462 45.2
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.7e-87 326.2 479 43.2
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 4.8e-87 325.9 480 42.3
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.8e-86 323.9 480 43.5
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.1e-86 323.2 449 45.0
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 3.4e-85 319.7 460 42.2
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.2e-84 317.0 477 41.9
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 3.6e-82 309.7 478 42.7
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.9e-81 306.2 476 41.8
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.1e-80 304.7 473 39.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.5e-80 304.3 473 41.0
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.0e-80 303.9 529 38.8
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 5.3e-78 295.8 472 39.4
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 3.5e-77 293.1 480 38.1
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 5.9e-77 292.4 476 39.3
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 7.7e-77 292.0 476 40.3
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.3e-76 291.2 480 38.3
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.7e-76 290.8 481 40.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 3.8e-76 289.7 480 37.9
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.9e-75 287.3 475 38.1
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 4.7e-74 282.7 484 39.7
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.7e-74 282.7 472 39.2
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 6.1e-74 282.3 479 38.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.0e-73 281.6 474 39.5
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.4e-73 281.2 474 39.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.0e-73 280.0 480 37.5
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 3.9e-73 279.6 483 39.1
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 6.7e-73 278.9 480 37.5
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.8e-73 278.5 478 39.3
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.5e-72 277.7 480 40.4
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 2.0e-72 277.3 478 39.7
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.4e-72 276.2 476 38.7
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 5.7e-72 275.8 474 39.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 5.7e-72 275.8 480 37.1
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.7e-72 275.0 476 38.7
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 8.2e-71 271.9 478 38.9
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.4e-70 271.2 329 47.1
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 5.3e-70 269.2 321 48.3
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.2e-69 268.1 476 37.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.2e-69 268.1 475 40.0
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.6e-69 267.7 476 37.6
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.6e-69 267.7 475 39.8
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.0e-69 267.3 476 38.9
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 7.7e-69 265.4 474 39.0
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 5.0e-68 262.7 476 38.9
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.5e-67 261.2 474 39.2
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 5.5e-67 259.2 475 38.5
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.6e-66 257.7 472 36.7
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 2.3e-65 253.8 468 36.1
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 4.0e-65 253.1 479 36.7
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 5.2e-65 252.7 475 37.1
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.2e-64 251.5 475 37.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 3.4e-64 250.0 471 37.8
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 4.4e-64 249.6 476 37.2
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 9.8e-64 248.4 509 34.0
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.3e-63 248.1 478 36.6
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.8e-63 246.9 481 36.2
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 2.8e-63 246.9 417 37.9
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 4.8e-63 246.1 435 39.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 4.8e-63 246.1 466 35.2
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 6.3e-63 245.7 485 35.9
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 6.3e-63 245.7 472 37.7
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 8.3e-63 245.4 468 35.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 5.4e-62 242.7 475 35.2
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.0e-61 240.7 467 34.9
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.5e-61 240.0 480 37.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 3.5e-61 240.0 466 34.1
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.2e-60 237.3 464 34.9
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.9e-60 236.9 465 37.4
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 6.5e-60 235.7 479 36.5
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.1e-59 235.0 475 35.8
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 3.2e-59 233.4 479 34.9
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.2e-59 233.0 481 37.2
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 8.0e-58 228.8 477 35.2
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 2.6e-56 223.8 467 33.4
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 1.3e-55 221.5 485 35.7
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.8e-54 217.6 471 34.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 5.4e-54 216.1 477 34.0
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 5.9e-53 212.6 464 32.5
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.3e-52 211.5 461 36.0
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.3e-52 210.7 323 41.8
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 5.0e-52 209.5 466 34.8
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 5.0e-52 209.5 467 36.0
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 6.6e-52 209.1 462 36.1
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 6.6e-52 209.1 467 36.0
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 8.6e-52 208.8 461 36.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 3.3e-51 206.8 459 35.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 5.5e-51 206.1 465 35.5
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-50 204.9 467 35.5
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.6e-50 204.5 465 34.6
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.1e-50 204.1 467 35.8
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.6e-50 203.4 468 34.8
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 4.0e-49 199.9 468 35.3
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 6.8e-49 199.1 482 34.0
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.0e-48 197.6 474 32.7
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.4e-48 196.8 462 33.3
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 7.5e-48 195.7 502 30.9
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-47 194.9 467 33.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 6.3e-47 192.6 468 34.6
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.2e-45 188.3 468 33.3
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.2e-42 178.3 284 37.7
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.6e-42 176.8 459 32.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 8.0e-42 175.6 409 33.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.4e-41 174.9 467 31.9
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 5.2e-41 172.9 474 30.0
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.3e-36 157.5 333 36.9
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.8e-34 150.6 476 29.4
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 5.8e-32 142.9 216 39.8
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.1e-27 128.6 99 68.7
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.1e-26 124.4 232 35.8
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.2e-23 114.4 324 30.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.4e-22 111.7 126 54.0
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 9.2e-22 109.0 396 29.5
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 1.2e-21 108.6 348 25.9
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-21 108.2 92 58.7
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-21 108.2 92 58.7
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 7.8e-21 105.9 472 24.6
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 7.3e-19 99.4 141 46.1
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.6e-18 98.2 125 43.2
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.1e-17 94.0 177 33.9
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 4.4e-16 90.1 146 37.7
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 7.6e-16 89.4 157 38.9
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 3.2e-14 84.0 73 56.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.2e-14 84.0 217 31.8
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 7.1e-14 82.8 128 38.3
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 3.5e-13 80.5 79 51.9
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 6.0e-13 79.7 100 46.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.8e-13 79.3 94 50.0
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-12 78.6 236 29.7
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.3e-12 77.8 185 31.4
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.9e-12 77.0 55 67.3
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 5.1e-12 76.6 69 60.9
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.3e-11 72.8 73 49.3
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.6e-10 70.5 54 66.7
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.1e-09 68.9 131 33.6
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 5.3e-09 66.6 77 41.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 2.6e-08 64.3 73 45.2
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.4e-08 63.9 79 45.6
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-08 63.5 35 85.7
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.8e-07 60.5 90 42.2
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 4.2e-06 57.0 52 59.6


User provided reference genes

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