Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.9e-108 396.0 219 100.0
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.9e-101 371.7 211 99.1
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 5.9e-49 198.4 137 80.3
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 7.7e-49 198.0 137 75.2
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-48 197.2 137 77.4
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.9e-47 193.4 137 75.2
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 1.9e-47 193.4 134 77.6
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.5e-47 193.0 137 75.2
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.2e-46 190.7 137 73.0
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.6e-46 190.3 137 75.2
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 2.1e-46 189.9 137 75.2
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.1e-46 189.9 137 74.5
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.1e-46 189.9 137 73.7
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.7e-46 189.5 137 73.7
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.7e-46 189.5 137 74.5
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 6.1e-46 188.3 137 71.5
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 1.0e-45 187.6 134 74.6
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.4e-45 187.2 137 75.2
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.8e-45 186.8 137 74.5
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.8e-45 186.8 135 74.1
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.8e-45 186.8 137 79.6
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 2.3e-45 186.4 137 73.7
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.9e-45 185.7 137 73.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.9e-45 185.7 137 71.5
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.1e-45 185.3 134 74.6
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 5.1e-45 185.3 136 72.1
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 5.1e-45 185.3 134 75.4
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 6.7e-45 184.9 137 73.7
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 6.7e-45 184.9 137 77.4
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 8.8e-45 184.5 137 72.3
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 8.8e-45 184.5 137 73.7
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 8.8e-45 184.5 134 79.9
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.1e-44 184.1 134 75.4
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.5e-44 183.7 134 79.9
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 2.0e-44 183.3 135 72.6
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.6e-44 183.0 135 71.9
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 3.3e-44 182.6 137 70.1
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.3e-44 182.6 133 72.9
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 9.7e-44 181.0 134 72.4
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.3e-43 180.6 137 69.3
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 1.7e-43 180.3 137 74.5
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 2.2e-43 179.9 135 72.6
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 4.8e-43 178.7 135 72.6
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 4.8e-43 178.7 135 68.9
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 6.3e-43 178.3 137 71.5
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 6.3e-43 178.3 137 74.5
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 6.3e-43 178.3 135 72.6
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.1e-42 177.6 137 72.3
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.4e-42 177.2 135 71.1
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-42 176.8 137 70.8
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 2.4e-42 176.4 134 71.6
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.4e-42 176.4 135 70.4
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 3.1e-42 176.0 135 70.4
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 6.9e-42 174.9 135 70.4
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 6.9e-42 174.9 134 68.7
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 9.1e-42 174.5 135 72.6
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.6e-41 172.9 134 71.6
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.6e-41 172.9 137 75.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 4.5e-41 172.2 135 68.1
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.9e-41 171.8 135 67.4
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 7.7e-41 171.4 135 67.4
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.3e-40 170.6 137 70.8
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.3e-40 170.6 137 74.5
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.3e-40 170.6 137 74.5
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.2e-40 169.9 137 68.6
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 2.9e-40 169.5 137 69.3
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 8.5e-40 167.9 134 70.1
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 8.5e-40 167.9 134 68.7
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.1e-39 167.5 149 65.1
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.4e-39 167.2 135 77.8
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 1.9e-39 166.8 133 69.9
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.9e-39 166.8 133 66.9
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.5e-39 166.4 135 74.8
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.1e-38 163.3 137 63.5
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 2.1e-38 163.3 134 66.4
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.7e-38 162.9 137 75.2
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.7e-38 162.9 134 64.9
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 6.1e-38 161.8 138 68.1
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 6.1e-38 161.8 137 74.5
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 6.1e-38 161.8 137 73.7
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 6.1e-38 161.8 137 74.5
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 6.1e-38 161.8 137 74.5
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 6.1e-38 161.8 137 74.5
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.8e-37 160.2 137 65.7
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.3e-37 159.8 137 75.2
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 2.3e-37 159.8 137 75.2
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 2.3e-37 159.8 137 75.2
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.3e-37 159.8 137 75.2
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.3e-37 159.8 137 75.2
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 3.0e-37 159.5 135 63.0
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.0e-37 159.5 138 65.2
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 5.2e-37 158.7 137 66.4
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 5.2e-37 158.7 137 64.2
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 5.2e-37 158.7 137 65.0
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 8.8e-37 157.9 137 73.0
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 2.0e-36 156.8 137 72.3
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.6e-36 156.4 137 73.0
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.3e-36 156.0 137 73.0
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 3.3e-36 156.0 137 73.0
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 7.4e-36 154.8 138 58.0
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 7.4e-36 154.8 138 58.0
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 9.7e-36 154.5 135 70.4
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.3e-35 154.1 137 71.5
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.2e-35 153.3 137 68.6
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.8e-35 152.9 137 63.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 3.7e-35 152.5 137 70.8
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 3.7e-35 152.5 137 70.8
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 3.7e-35 152.5 135 69.6
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 6.3e-35 151.8 129 65.1
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-34 150.2 137 62.8
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.8e-34 150.2 137 62.8
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 3.1e-34 149.4 137 71.5
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.3e-34 148.7 137 58.4
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.2e-33 147.5 137 69.3
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.6e-33 147.1 137 61.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.5e-33 146.0 137 65.7
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 4.5e-33 145.6 137 65.7
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 4.5e-33 145.6 134 70.1
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.0e-32 144.4 134 68.7
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.7e-32 143.7 137 65.0
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.7e-32 143.7 137 68.6
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.9e-32 142.9 137 59.1
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 2.9e-32 142.9 137 70.1
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 5.0e-32 142.1 137 67.9
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 8.5e-32 141.4 137 68.6
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 2.5e-31 139.8 137 64.2
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.5e-31 139.8 137 64.2
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 4.2e-31 139.0 77 88.3
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 7.2e-31 138.3 134 67.9
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.6e-30 137.1 135 67.4
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.6e-30 137.1 135 67.4
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 2.1e-30 136.7 134 58.2
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 2.7e-30 136.3 137 59.9
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.6e-30 136.0 134 57.5
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 3.6e-30 136.0 134 57.5
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 4.7e-30 135.6 134 57.5
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 6.1e-30 135.2 134 66.4
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.8e-29 133.7 137 62.0
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.8e-29 133.7 134 56.0
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.3e-29 133.3 137 62.0
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 5.2e-29 132.1 137 61.3
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 6.7e-29 131.7 137 60.6
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 8.8e-29 131.3 139 54.0
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.2e-28 131.0 137 56.9
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.6e-28 129.8 134 62.7
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.7e-28 128.6 137 59.9
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.2e-27 126.7 137 61.3
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.7e-27 125.9 137 59.1
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 4.8e-27 125.6 137 64.2
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 2.4e-26 123.2 134 61.9
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 9.1e-26 121.3 138 48.6
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.7e-24 117.1 71 78.9
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.8e-24 115.9 77 72.7
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 8.8e-21 104.8 59 84.7
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.0e-20 103.6 48 100.0
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 4.8e-19 99.0 130 47.7
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 3.1e-18 96.3 137 40.9
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 1.2e-12 77.8 110 50.0
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 4.5e-09 65.9 68 55.9
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.7e-08 63.9 81 46.9


User provided reference genes

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