Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 0.0e+00 1390.6 711 100.0
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 0.0e+00 1340.5 711 97.2
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 3.7e-310 1067.8 719 76.9
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 4.8e-286 987.6 710 71.4
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 3.2e-282 974.9 807 65.6
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 1.2e-281 973.0 706 70.3
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.1e-277 959.9 707 70.0
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.8e-277 959.1 715 68.5
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 4.1e-277 958.0 707 70.3
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 2.9e-275 951.8 707 69.6
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 2.8e-273 945.3 718 68.2
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 4.0e-272 941.4 707 68.9
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.5e-271 939.5 710 68.7
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 3.9e-267 924.9 709 66.4
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.9e-266 922.5 716 67.0
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 1.8e-264 916.0 708 66.9
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 3.7e-262 908.3 713 65.9
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 6.4e-262 907.5 707 66.9
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 2.4e-261 905.6 712 65.9
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.4e-261 905.6 707 67.3
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 1.6e-260 902.9 702 66.2
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 1.1e-258 896.7 721 65.9
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.1e-258 896.7 707 66.8
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.9e-258 896.0 713 65.4
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 7.3e-258 894.0 707 66.5
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.4e-256 889.8 717 65.1
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.7e-254 882.9 723 64.6
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 6.4e-254 880.9 716 65.4
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 6.4e-254 880.9 709 64.7
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 3.2e-253 878.6 723 63.9
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 3.5e-252 875.2 706 64.2
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 6.0e-252 874.4 711 62.4
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 1.0e-251 873.6 712 64.2
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 6.6e-251 870.9 709 63.5
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 1.1e-250 870.2 712 63.6
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.1e-250 870.2 711 63.3
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.9e-250 869.4 716 65.2
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.6e-249 865.1 706 64.2
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.1e-248 863.6 676 68.9
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 2.0e-247 859.4 719 63.1
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 5.8e-247 857.8 703 62.0
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 7.6e-247 857.4 711 62.3
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 8.3e-246 854.0 712 62.1
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 4.1e-245 851.7 716 61.3
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 4.1e-245 851.7 709 63.0
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 5.4e-245 851.3 711 61.6
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 7.1e-245 850.9 711 61.5
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 1.2e-244 850.1 716 63.3
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 3.9e-243 845.1 714 62.7
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 6.6e-243 844.3 740 60.5
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 3.3e-242 842.0 714 61.9
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 5.6e-242 841.3 722 61.2
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 9.6e-242 840.5 706 61.5
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.2e-241 840.1 699 61.9
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 3.6e-241 838.6 710 61.0
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 4.7e-241 838.2 640 67.7
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 1.1e-240 837.0 715 62.1
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.2e-239 833.6 712 61.7
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 3.4e-239 832.0 708 62.1
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 5.8e-239 831.2 706 64.2
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.3e-238 830.1 756 58.5
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.9e-237 826.2 714 61.5
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.5e-234 816.6 721 59.8
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 5.3e-232 808.1 711 60.5
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 5.8e-231 804.7 724 58.8
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 7.1e-229 797.7 716 59.4
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 3.1e-224 782.3 656 62.2
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 6.0e-220 768.1 718 58.1
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 3.9e-219 765.4 545 70.5
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.4e-216 756.1 725 58.2
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 1.2e-215 753.8 589 66.2
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.2e-215 753.8 709 59.8
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.1e-213 747.3 729 58.3
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 7.9e-212 741.1 532 71.1
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 3.0e-211 739.2 549 68.1
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.1e-211 738.4 709 56.3
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 1.3e-209 733.8 732 55.1
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 1.6e-201 706.8 512 71.7
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 1.8e-200 703.4 539 67.3
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 2.4e-200 703.0 719 53.7
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 9.4e-197 691.0 581 62.5
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 5.1e-195 685.3 459 75.2
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.3e-193 680.6 538 65.1
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 8.8e-187 657.9 719 51.9
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 7.7e-183 644.8 706 52.1
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.3e-177 627.5 733 47.1
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 4.4e-170 602.4 501 64.5
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 5.9e-167 592.0 732 46.2
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 4.9e-161 572.4 458 65.1
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 2.0e-154 550.4 398 70.1
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.6e-151 540.8 728 42.9
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 9.5e-149 531.6 362 73.5
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 3.6e-148 529.6 362 73.2
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 7.8e-143 511.9 807 42.4
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.6e-134 481.9 354 67.2
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.3e-133 479.6 354 67.2
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 2.8e-132 476.9 413 61.5
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.6e-130 470.3 354 65.8
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 9.6e-125 451.8 312 75.0
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 9.3e-120 435.3 322 70.8
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 1.6e-119 434.5 782 37.1
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.3e-117 426.8 364 61.5
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 1.1e-115 421.8 897 34.6
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 4.8e-108 396.4 717 37.2
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.4e-91 341.7 340 53.2
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 5.0e-89 333.2 324 55.6
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 9.3e-88 328.9 747 32.3
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 7.4e-85 319.3 293 59.0
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 6.1e-79 299.7 262 62.2
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.4e-78 298.5 206 74.8
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 8.2e-68 262.7 203 64.0
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.1e-67 262.3 270 57.0
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 3.2e-64 250.8 202 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 4.4e-61 240.4 330 44.8
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 7.5e-61 239.6 171 67.8
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 1.2e-58 232.3 664 28.9
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 6.5e-57 226.5 182 62.6
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 2.6e-53 214.5 203 60.6
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 7.0e-51 206.5 163 63.2
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.9e-48 198.4 184 54.3
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.2e-47 195.7 168 58.9
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-34 151.8 133 60.2
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 8.6e-33 146.4 147 57.1
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.3e-32 144.1 158 57.0
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 3.1e-30 137.9 145 55.9
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.0e-25 122.9 154 46.8
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.0e-25 122.9 149 48.3
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 7.5e-21 106.7 141 45.4
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 2.4e-11 75.1 50 70.0
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 9.2e-11 73.2 81 54.3
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 9.2e-11 73.2 51 60.8
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.2e-10 72.8 76 47.4
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 3.0e-09 68.2 35 97.1
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 5.6e-08 63.9 168 31.0


User provided reference genes

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