Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 5.8e-69 264.2 147 100.0
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 1.2e-37 160.2 126 79.4
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 4.5e-21 105.1 131 61.1
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 2.8e-18 95.9 126 52.4
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 4.9e-15 85.1 141 55.3
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.8e-14 83.2 94 54.3
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 2.4e-14 82.8 70 65.7
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 3.5e-13 79.0 137 43.1
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 4.5e-13 78.6 94 51.1
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 1.3e-12 77.0 94 48.9
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 1.3e-12 77.0 132 37.9
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 1.3e-12 77.0 127 40.9
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 2.9e-12 75.9 94 47.9
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.8e-12 75.5 106 44.3
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 5.0e-12 75.1 131 44.3
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 2.5e-11 72.8 134 46.3
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 3.3e-11 72.4 127 42.5
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 4.3e-11 72.0 96 51.0
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 5.6e-11 71.6 62 64.5
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 9.5e-11 70.9 96 45.8
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 1.6e-10 70.1 141 41.8
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 2.8e-10 69.3 101 49.5
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 4.7e-10 68.6 62 61.3
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 6.1e-10 68.2 62 62.9
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 8.0e-10 67.8 100 43.0
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 8.0e-10 67.8 104 48.1
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 1.0e-09 67.4 63 57.1
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 1.0e-09 67.4 81 51.9
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 1.0e-09 67.4 124 40.3
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 1.4e-09 67.0 132 44.7
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 4.0e-09 65.5 64 59.4
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 4.0e-09 65.5 126 38.9
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 5.2e-09 65.1 65 52.3
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 6.8e-09 64.7 84 46.4
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 8.9e-09 64.3 126 39.7
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 8.9e-09 64.3 126 39.7
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 8.9e-09 64.3 118 44.9
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 1.2e-08 63.9 73 50.7
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 1.2e-08 63.9 71 50.7
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 1.2e-08 63.9 122 39.3
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 1.5e-08 63.5 84 46.4
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 1.5e-08 63.5 70 55.7
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.5e-08 63.5 67 53.7
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 2.0e-08 63.2 84 46.4
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 2.0e-08 63.2 103 35.9
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 2.0e-08 63.2 138 40.6
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 2.6e-08 62.8 126 34.1
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 2.6e-08 62.8 63 57.1
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 2.6e-08 62.8 117 40.2
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 3.4e-08 62.4 66 54.5
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 3.4e-08 62.4 109 45.9
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 4.4e-08 62.0 129 36.4
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 4.4e-08 62.0 129 36.4
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 4.4e-08 62.0 129 36.4
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 4.4e-08 62.0 70 54.3
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 4.4e-08 62.0 70 54.3
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.8e-08 61.6 117 39.3
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 7.5e-08 61.2 71 49.3
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 7.5e-08 61.2 116 39.7
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.3e-07 60.5 71 49.3
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 1.3e-07 60.5 71 49.3
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 1.7e-07 60.1 62 53.2
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 1.7e-07 60.1 116 38.8
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 2.2e-07 59.7 124 41.1
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.2e-07 59.7 63 54.0
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 2.9e-07 59.3 62 53.2
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 2.9e-07 59.3 60 53.3
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.9e-07 59.3 60 53.3
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.9e-07 59.3 60 53.3
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.9e-07 59.3 60 53.3
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.9e-07 59.3 60 53.3
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.9e-07 59.3 60 53.3
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 4.9e-07 58.5 101 48.5
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 4.9e-07 58.5 60 51.7
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 4.9e-07 58.5 119 43.7
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 6.4e-07 58.2 67 47.8
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 8.3e-07 57.8 95 41.1
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 8.3e-07 57.8 116 37.9
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 1.4e-06 57.0 62 46.8
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 1.9e-06 56.6 135 35.6
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 2.4e-06 56.2 66 48.5
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 2.4e-06 56.2 108 38.9
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 2.4e-06 56.2 124 37.1
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 2.4e-06 56.2 138 37.0
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 5.4e-06 55.1 66 47.0
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 7.0e-06 54.7 66 45.5
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 9.2e-06 54.3 66 45.5


User provided reference genes

Program Settings