Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.5e-99 365.5 195 100.0
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 4.7e-66 255.0 206 73.3
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 2.6e-64 249.2 210 70.5
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 7.5e-64 247.7 210 70.0
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 7.5e-64 247.7 210 70.0
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 7.5e-64 247.7 205 69.8
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.3e-63 246.9 198 70.2
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.7e-63 246.5 210 69.5
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 3.7e-63 245.4 210 70.0
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 6.4e-63 244.6 210 69.0
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 8.3e-63 244.2 210 69.5
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 1.4e-62 243.4 208 67.8
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.8e-62 243.0 207 69.1
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 7.0e-62 241.1 210 68.6
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 1.6e-61 240.0 204 71.1
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 5.9e-61 238.0 210 68.1
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 5.9e-61 238.0 209 67.5
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 2.3e-60 236.1 204 70.1
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 3.9e-60 235.3 210 67.6
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 8.6e-60 234.2 206 68.4
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 8.6e-60 234.2 206 66.5
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.1e-59 233.8 207 67.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.1e-59 233.8 198 69.7
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 2.5e-59 232.6 204 66.7
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 2.5e-59 232.6 209 67.5
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.3e-59 232.3 210 65.2
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 3.3e-59 232.3 208 67.8
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 5.6e-59 231.5 209 66.0
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 9.5e-59 230.7 212 66.0
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 1.2e-58 230.3 210 65.7
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 2.1e-58 229.6 210 67.1
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 4.7e-58 228.4 205 69.3
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 6.2e-58 228.0 197 66.0
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 6.2e-58 228.0 207 65.7
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 8.0e-58 227.6 200 67.0
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.1e-57 227.3 207 67.1
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 1.1e-57 227.3 208 65.4
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 2.3e-57 226.1 198 66.7
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 2.3e-57 226.1 207 64.7
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 3.1e-57 225.7 206 66.5
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 3.1e-57 225.7 212 64.6
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 1.5e-56 223.4 206 64.6
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.5e-56 223.4 211 63.5
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 2.0e-56 223.0 204 66.2
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 2.6e-56 222.6 207 64.3
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 2.6e-56 222.6 211 65.4
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 3.4e-56 222.2 211 65.9
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 4.4e-56 221.9 211 64.9
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 4.4e-56 221.9 196 64.3
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 5.8e-56 221.5 211 63.0
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 7.5e-56 221.1 211 63.0
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.3e-55 220.3 202 65.3
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.3e-55 220.3 199 66.3
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.7e-55 219.9 211 65.4
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 4.9e-55 218.4 206 68.0
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-54 217.2 202 66.3
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.9e-54 216.5 203 64.0
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.9e-54 216.5 201 66.7
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 4.1e-54 215.3 206 66.0
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 5.4e-54 214.9 206 65.5
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 9.2e-54 214.2 202 63.9
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 9.2e-54 214.2 203 65.5
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.2e-54 214.2 203 65.5
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 1.2e-53 213.8 200 67.5
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.0e-53 213.0 202 65.3
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 2.0e-53 213.0 198 64.6
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.5e-53 212.2 199 63.8
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.6e-53 211.8 202 64.9
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.6e-53 211.8 202 64.9
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.0e-52 210.7 204 61.8
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.0e-52 210.7 208 62.0
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.0e-52 210.7 199 64.8
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.7e-52 209.9 201 60.2
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 5.0e-52 208.4 215 62.3
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 5.0e-52 208.4 199 64.3
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 5.0e-52 208.4 211 61.6
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 6.6e-52 208.0 212 62.7
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 8.6e-52 207.6 198 63.1
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.1e-51 207.2 198 62.1
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.9e-51 206.5 198 64.6
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 3.3e-51 205.7 212 59.4
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 5.6e-51 204.9 205 61.5
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 5.6e-51 204.9 211 60.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 5.6e-51 204.9 205 62.4
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 7.3e-51 204.5 205 60.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 1.2e-50 203.8 208 60.6
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.6e-50 203.4 204 61.8
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 3.6e-50 202.2 210 60.5
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 3.6e-50 202.2 218 58.3
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 8.1e-50 201.1 194 60.3
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.1e-49 200.7 199 59.3
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.4e-49 200.3 198 60.1
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.3e-49 199.5 209 58.4
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 2.2e-47 193.0 211 58.8
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 3.7e-47 192.2 205 61.5
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 2.4e-46 189.5 176 67.6
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 7.1e-46 188.0 200 61.0
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 7.1e-46 188.0 201 60.7
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 7.1e-46 188.0 199 56.8
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 1.6e-45 186.8 213 55.4
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 2.1e-45 186.4 213 54.9
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 4.6e-45 185.3 209 58.9
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 7.8e-45 184.5 205 58.0
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 1.3e-44 183.7 205 56.6
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.3e-44 183.7 183 61.2
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 1.3e-44 183.7 205 58.0
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.7e-44 183.3 205 55.1
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.7e-44 183.3 202 59.9
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 5.1e-44 181.8 213 56.8
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 6.6e-44 181.4 211 54.5
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 6.6e-44 181.4 205 54.6
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 8.6e-44 181.0 205 55.6
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 8.6e-44 181.0 205 55.6
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 8.6e-44 181.0 200 57.0
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.1e-43 180.6 204 57.4
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 4.3e-43 178.7 209 55.0
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 4.3e-43 178.7 209 55.0
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 7.3e-43 177.9 212 54.2
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 7.3e-43 177.9 210 54.3
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 7.3e-43 177.9 212 54.2
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 7.3e-43 177.9 212 54.2
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 7.3e-43 177.9 210 54.3
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 9.5e-43 177.6 211 54.0
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 9.5e-43 177.6 204 55.4
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 9.5e-43 177.6 211 54.0
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.4e-41 173.7 203 60.1
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 6.8e-41 171.4 208 55.3
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 7.6e-40 167.9 209 52.2
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 4.9e-39 165.2 154 61.7
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 2.1e-37 159.8 147 56.5
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 8.6e-36 154.5 198 50.5
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 9.6e-35 151.0 143 58.0
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 9.6e-35 151.0 180 61.1
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 2.0e-32 143.3 201 50.2
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 3.4e-32 142.5 203 47.8
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 4.4e-32 142.1 177 50.8
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 7.6e-32 141.4 202 49.0
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.3e-31 140.6 141 53.2
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.2e-30 136.0 122 66.4
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.4e-30 135.2 141 51.1
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 7.1e-30 134.8 139 54.7
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.2e-29 134.0 141 49.6
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 1.0e-28 131.0 117 63.2
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.9e-27 126.7 205 46.3
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 1.4e-25 120.6 140 47.9
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 2.2e-23 113.2 201 39.8
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 4.2e-22 109.0 130 54.6
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 5.4e-22 108.6 138 49.3
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.6e-21 107.1 138 50.0
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 5.6e-19 98.6 137 48.2
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.3e-17 92.0 127 48.8
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 6.9e-17 91.7 204 38.2
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 9.0e-17 91.3 141 42.6
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 1.5e-16 90.5 156 46.8
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.6e-16 89.7 77 63.6
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 5.8e-16 88.6 185 40.0
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 9.9e-16 87.8 90 60.0
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 4.9e-15 85.5 117 42.7
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 6.7e-12 75.1 141 39.7
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 4.9e-07 58.9 118 33.9


User provided reference genes

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