Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.8e-34 147.1 68 100.0
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.8e-34 147.1 68 100.0
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-16 89.0 102 50.0
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 8.5e-15 83.2 103 48.5
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.6e-13 79.0 60 63.3
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 2.1e-13 78.6 60 65.0
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.0e-12 74.7 89 46.1
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 3.4e-11 71.2 79 49.4
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 3.4e-11 71.2 44 70.5
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 5.7e-11 70.5 79 50.6
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 9.8e-11 69.7 86 46.5
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 1.7e-10 68.9 50 64.0
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 2.8e-10 68.2 48 64.6
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 6.3e-10 67.0 44 65.9
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 8.3e-10 66.6 86 45.3
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 2.4e-09 65.1 47 63.8
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.4e-09 65.1 46 65.2
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 7.0e-09 63.5 74 48.6
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 7.0e-09 63.5 54 55.6
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.2e-08 62.8 86 41.9
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 1.2e-08 62.8 86 43.0
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 2.0e-08 62.0 77 46.8
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 2.7e-08 61.6 49 61.2
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 2.7e-08 61.6 77 46.8
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 3.5e-08 61.2 80 45.0
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 3.5e-08 61.2 46 58.7
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 4.5e-08 60.8 49 61.2
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 7.7e-08 60.1 45 62.2
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 1.3e-07 59.3 47 59.6
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 2.3e-07 58.5 87 40.2
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 2.3e-07 58.5 83 47.0
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 2.3e-07 58.5 46 65.2
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 2.3e-07 58.5 46 60.9
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 2.9e-07 58.2 80 46.2
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 8.6e-07 56.6 44 63.6
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.5e-06 55.8 44 59.1
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 1.9e-06 55.5 80 41.2
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.9e-06 55.5 64 51.6
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 3.3e-06 54.7 44 59.1
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 4.2e-06 54.3 60 46.7
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 5.5e-06 53.9 62 45.2
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.5e-06 53.9 62 45.2
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 5.5e-06 53.9 44 54.5
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 7.2e-06 53.5 44 59.1
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 7.2e-06 53.5 45 60.0
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 9.5e-06 53.1 50 56.0
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 9.5e-06 53.1 42 57.1
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 9.5e-06 53.1 40 62.5


User provided reference genes

Program Settings