Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012083 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 0.0e+00 1281.2 706 100.0
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 0.0e+00 1280.8 706 99.9
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 7.7e-260 900.6 728 71.4
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 4.7e-257 891.3 726 71.6
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 4.0e-248 861.7 716 70.1
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 2.1e-241 839.3 684 73.2
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.3e-238 830.1 720 68.1
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 6.0e-236 821.2 715 70.6
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 1.5e-231 806.6 676 71.3
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 1.1e-221 773.9 730 64.1
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 2.8e-217 759.2 708 62.9
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 8.1e-217 757.7 575 71.7
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 1.2e-215 753.8 712 64.0
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 5.8e-215 751.5 714 61.6
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 2.4e-213 746.1 701 61.9
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 4.2e-213 745.3 710 63.7
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 4.2e-213 745.3 575 70.3
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 7.1e-213 744.6 716 62.6
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 1.0e-211 740.7 711 64.0
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 6.6e-211 738.0 625 66.6
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 4.3e-210 735.3 720 61.9
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 4.3e-210 735.3 616 70.6
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 5.6e-210 734.9 640 64.2
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.3e-209 733.8 722 63.4
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 2.1e-209 733.0 573 70.3
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 2.8e-209 732.6 648 64.4
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 2.8e-209 732.6 648 64.4
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 6.2e-209 731.5 717 60.7
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.4e-208 730.3 709 62.8
Lj5A229T67 Lonicera japonica HOM05D001473 ORTHO05D003934 2.6e-207 726.1 502 80.5
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 4.4e-207 725.3 650 66.2
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 4.4e-207 725.3 529 72.2
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.3e-206 723.8 722 60.1
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 8.4e-206 721.1 671 64.1
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 2.4e-205 719.5 618 71.2
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 5.4e-205 718.4 614 66.1
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 7.1e-205 718.0 574 71.6
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 3.5e-204 715.7 644 66.5
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.0e-203 714.1 699 62.2
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 8.7e-203 711.1 646 63.0
DCAR_023095 Daucus carota HOM05D001473 ORTHO05D003934 1.1e-202 710.7 518 76.4
Gohir.A11G247900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 5.6e-202 708.4 648 63.1
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 7.3e-202 708.0 664 62.0
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 1.6e-201 706.8 698 62.9
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 2.1e-201 706.4 705 58.7
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 4.8e-201 705.3 721 59.1
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.1e-200 704.1 531 70.4
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 1.8e-200 703.4 549 70.5
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 2.4e-200 703.0 651 64.7
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 2.4e-200 703.0 705 58.9
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 1.2e-199 700.7 696 59.5
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.2e-199 700.7 716 57.1
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 1.5e-199 700.3 537 71.1
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 2.0e-199 699.9 698 61.0
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 7.6e-199 698.0 584 69.9
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 7.6e-199 698.0 577 69.3
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 1.3e-198 697.2 537 71.5
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 1.4e-197 693.7 539 71.2
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.9e-197 693.3 696 61.5
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 4.2e-197 692.2 582 67.7
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 5.4e-197 691.8 537 71.1
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 1.6e-196 690.3 522 73.6
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 6.0e-196 688.3 723 55.6
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 7.9e-196 688.0 683 62.2
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 1.0e-195 687.6 632 65.0
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 8.7e-195 684.5 611 63.8
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 1.1e-194 684.1 585 67.7
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 2.0e-191 673.3 522 72.8
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 2.6e-191 672.9 680 62.9
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 4.5e-191 672.2 580 67.6
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 2.2e-190 669.8 632 60.9
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 2.2e-190 669.8 674 61.9
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 1.1e-189 667.5 715 58.2
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 1.1e-189 667.5 522 70.9
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 9.3e-189 664.5 630 62.5
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 2.1e-188 663.3 524 66.8
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 3.5e-188 662.5 561 68.1
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.9e-188 661.4 657 62.7
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 5.1e-187 658.7 677 61.3
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 6.7e-187 658.3 522 71.5
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 8.7e-187 657.9 541 67.1
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.7e-186 655.2 682 60.7
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 7.4e-186 654.8 713 57.5
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 1.3e-185 654.1 532 70.3
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.1e-185 653.3 672 61.2
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 1.2e-183 647.5 703 58.5
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 1.2e-183 647.5 545 65.7
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-181 641.0 712 58.3
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 9.3e-181 637.9 606 65.3
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 1.2e-180 637.5 553 66.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.6e-180 635.6 713 57.9
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 6.1e-180 635.2 526 64.4
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 3.3e-178 629.4 548 66.2
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 2.2e-177 626.7 504 65.7
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 3.7e-177 625.9 772 51.9
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 1.4e-176 624.0 545 63.5
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 3.1e-176 622.9 527 64.7
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 1.0e-174 617.8 532 63.2
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 6.5e-174 615.1 504 68.3
Zm00001eb142770 Zea mays HOM05D001473 ORTHO05D003934 6.5e-174 615.1 523 67.3
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 3.2e-173 612.8 577 59.6
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 5.5e-173 612.1 503 69.0
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 7.2e-173 611.7 516 63.8
HPP92_023254 Vanilla planifolia HOM05D001473 ORTHO05D003934 9.4e-173 611.3 726 51.2
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 1.0e-171 607.8 504 65.1
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 3.0e-171 606.3 504 65.1
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 3.3e-170 602.8 537 61.5
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 3.3e-170 602.8 537 61.5
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 6.9e-168 595.1 529 63.3
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 1.0e-166 591.3 791 49.1
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 1.0e-166 591.3 791 49.1
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 1.0e-166 591.3 504 63.3
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 1.0e-166 591.3 504 63.3
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.5e-165 585.5 863 46.6
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 5.1e-163 578.9 505 65.7
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 6.7e-163 578.6 534 62.0
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 1.1e-162 577.8 538 60.8
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 1.1e-162 577.8 538 60.8
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 4.1e-160 569.3 632 54.6
SEGI_38835 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 7.7e-159 565.1 514 59.7
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 6.5e-158 562.0 663 54.1
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 8.5e-158 561.6 514 59.1
Peaxi162Scf00304g00075 Petunia axillaris HOM05D001473 ORTHO05D003934 2.3e-155 553.5 502 59.8
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 3.0e-155 553.1 640 55.3
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 7.5e-146 521.9 518 56.0
Sc03g0006100 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.2e-140 504.6 488 59.6
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 5.4e-136 489.2 620 47.6
GSVIVG01023526001 Vitis vinifera HOM05D001473 ORTHO05D003934 6.1e-132 475.7 305 83.6
Medtr5g010470 Medicago truncatula HOM05D001473 ORTHO05D003934 2.2e-129 467.2 421 65.8
ClCG06G009620 Citrullus lanatus HOM05D001473 ORTHO05D003934 3.3e-125 453.4 332 72.0
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 4.1e-120 436.4 508 49.4
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 2.1e-116 424.1 511 49.3
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 4.0e-115 419.9 509 49.1
arahy.Tifrunner.gnm1.ann1.8L6PVU Arachis hypogaea HOM05D001473 ORTHO05D003934 1.5e-114 417.9 327 73.7
DCAR_029377 Daucus carota HOM05D001473 ORTHO05D003934 6.4e-105 386.0 505 48.1
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 3.9e-102 376.7 501 46.7
HPP92_023312 Vanilla planifolia HOM05D001473 ORTHO05D003934 6.9e-91 339.3 520 44.2
Cpa.g.sc306.1 Carica papaya HOM05D001473 ORTHO05D003934 1.9e-88 331.3 236 74.6
Cpa.g.sc306.2 Carica papaya HOM05D001473 ORTHO05D003934 2.4e-80 304.3 354 52.5
Sc03g0006690 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.0e-73 282.3 204 72.5
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 2.4e-67 261.2 583 35.3
ClCG06G009590 Citrullus lanatus HOM05D001473 ORTHO05D003934 4.5e-66 256.9 374 43.9
CsaV3_1G045340 Cucumis sativus L. HOM05D001473 ORTHO05D003934 7.4e-61 239.6 191 73.3
arahy.Tifrunner.gnm1.ann1.0270XD Arachis hypogaea HOM05D001473 ORTHO05D003934 8.2e-60 236.1 197 63.5
RcHm_v2.0_Chr5g0032281 Rosa chinensis HOM05D001473 ORTHO05D003934 5.9e-58 229.9 367 45.0
Cre03.g197350 Chlamydomonas reinhardtii HOM05D001473 ORTHO05D003934 1.1e-51 209.1 508 34.8
arahy.Tifrunner.gnm1.ann1.9D2XZ1 Arachis hypogaea HOM05D001473 ORTHO05D003934 9.1e-43 179.5 171 70.2
arahy.Tifrunner.gnm1.ann1.E23V63 Arachis hypogaea HOM05D001473 ORTHO05D003934 3.5e-42 177.6 155 66.5
PRCOL_00004307 Prasinoderma coloniale HOM05D001473 ORTHO05D003934 8.2e-36 156.4 508 33.3
Nitab4.5_0018899g0010 Nicotiana tabacum HOM05D001473 ORTHO05D003934 1.1e-35 156.0 174 55.7
CsaV3_1G045330 Cucumis sativus L. HOM05D001473 ORTHO05D003934 4.5e-34 150.6 96 77.1
FvH4_3g19200 Fragaria vesca HOM05D001473 ORTHO05D003934 7.5e-29 133.3 225 43.1
SMO196G0113 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 3.1e-27 127.9 276 37.0
BcaB08g37390 Brassica carinata HOM05D001473 ORTHO05D003934 1.2e-26 125.9 160 50.0
SMO196G0150 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 5.5e-24 117.1 240 36.7
Thhalv10001097m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 1.6e-23 115.5 204 40.2
Sabra19G0030800 Salix brachista HOM05D001473 ORTHO05D019080 2.1e-23 115.2 279 37.6
Sabra19G0030700 Salix brachista HOM05D001473 ORTHO05D019080 6.8e-22 110.2 357 32.8
QL10p043044 Quercus lobata HOM05D001473 ORTHO05D003934 8.8e-22 109.8 157 45.9
SMO234G0003 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 7.5e-21 106.7 260 33.5
Migut.B01119 Erythranthe guttata HOM05D001473 ORTHO05D003934 6.3e-20 103.6 185 40.0
QL10p043041 Quercus lobata HOM05D001473 ORTHO05D019080 1.6e-18 99.0 100 59.0
Cfa025479 Carpinus fangiana HOM05D001473 ORTHO05D003934 4.5e-18 97.4 501 26.1
CsaV3_1G045350 Cucumis sativus L. HOM05D001473 ORTHO05D003934 7.3e-16 90.1 49 87.8
FAN11G3850 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.7e-12 77.8 193 36.8
Psat5g036600 Pisum sativum HOM05D000945 ORTHO05D000919 1.3e-09 69.3 42 76.2
CsaV3_1G045320 Cucumis sativus L. HOM05D001473 ORTHO05D019080 3.9e-09 67.8 278 29.9
BcaB06g27306 Brassica carinata HOM05D001473 ORTHO05D003934 7.3e-08 63.5 83 42.2
MD12G1246500 Malus domestica HOM05D001473 ORTHO05D003934 8.9e-06 56.6 64 53.1


User provided reference genes

Program Settings