Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011816 Camellia sinensis var. sinensis HOM05D007197 ORTHO05D009064 2.4e-173 612.1 304 100.0
Actinidia03776 Actinidia chinensis HOM05D007197 ORTHO05D009064 3.4e-140 501.9 314 80.9
Rhsim01G0224100 Rhododendron simsii HOM05D007197 ORTHO05D009064 9.4e-138 493.8 322 76.7
Dinv32855 Davidia involucrata HOM05D007197 ORTHO05D009064 1.8e-136 489.6 311 79.7
Hma1.2p1_0846F.1_g227730 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 2.2e-126 456.1 303 74.9
CiPaw.13G100300 Carya illinoinensis HOM05D007197 ORTHO05D009064 2.2e-118 429.5 317 69.1
QL01p033595 Quercus lobata HOM05D007197 ORTHO05D009064 3.5e-116 422.2 317 68.1
GSVIVG01025047001 Vitis vinifera HOM05D007197 ORTHO05D009064 5.9e-116 421.4 320 70.0
TAR636G0394 Trochodendron aralioides HOM05D007197 ORTHO05D009064 7.7e-116 421.0 317 67.5
Atru.chr7.1106 Acer truncatum HOM05D007197 ORTHO05D009064 1.1e-114 417.2 320 67.5
Prupe.6G086100 Prunus persica HOM05D007197 ORTHO05D009064 2.5e-114 416.0 318 68.2
Oeu017383.1 Olea europaea HOM05D007197 ORTHO05D009064 8.0e-113 411.0 316 65.5
Cfa011437 Carpinus fangiana HOM05D007197 ORTHO05D009064 2.3e-112 409.5 310 69.4
Haze_24013 Corylus avellana HOM05D007197 ORTHO05D009064 2.4e-109 399.4 358 60.9
Haze_24019 Corylus avellana HOM05D007197 ORTHO05D009064 3.1e-109 399.1 358 60.6
Cc01_g12210 Coffea canephora HOM05D007197 ORTHO05D009064 4.1e-109 398.7 316 64.9
TWI79G0955 Tripterygium wilfordii HOM05D007197 ORTHO05D009064 2.7e-108 396.0 311 65.3
COL.COLO4_15236 Corchorus olitorius HOM05D007197 ORTHO05D009064 1.1e-106 390.6 326 62.6
Phvul.011G067900 Phaseolus vulgaris HOM05D007197 ORTHO05D009064 2.5e-106 389.4 312 64.1
MD11G1115100 Malus domestica HOM05D007197 ORTHO05D009064 1.2e-105 387.1 320 62.5
Thecc.09G328900 Theobroma cacao HOM05D007197 ORTHO05D009064 2.1e-105 386.3 308 66.6
RcHm_v2.0_Chr5g0062661 Rosa chinensis HOM05D007197 ORTHO05D009064 1.0e-104 384.0 316 62.3
Duzib168G0795 Durio zibethinus HOM05D007197 ORTHO05D009064 1.8e-104 383.3 307 64.5
Gohir.A05G098300 Gossypium hirsutum HOM05D007197 ORTHO05D009064 1.8e-104 383.3 317 62.1
FAN11G2804 Fragaria x ananassa HOM05D007197 ORTHO05D009064 1.2e-103 380.6 321 61.7
Glyma.11G143900 Glycine max HOM05D007197 ORTHO05D009064 3.4e-103 379.0 318 61.0
ECA248G2344 Erigeron canadensis HOM05D007197 ORTHO05D009064 5.7e-103 378.3 315 61.9
Nitab4.5_0000610g0220 Nicotiana tabacum HOM05D007197 ORTHO05D009064 5.7e-103 378.3 313 59.7
MELO3C013672.2 Cucumis melo HOM05D007197 ORTHO05D009064 1.3e-102 377.1 320 62.2
Nn2g10506 Nelumbo nucifera HOM05D007197 ORTHO05D009064 1.3e-102 377.1 319 61.8
CAN.G764.13 Capsicum annuum HOM05D007197 ORTHO05D009064 2.8e-102 375.9 313 60.4
VMungo1127G0131 Vigna mungo HOM05D007197 ORTHO05D009064 4.9e-102 375.2 313 62.0
Eucgr.J02088 Eucalyptus grandis HOM05D007197 ORTHO05D009064 5.4e-101 371.7 320 60.3
Sopen11g030850 Solanum pennellii HOM05D007197 ORTHO05D009064 7.0e-101 371.3 313 59.4
Gorai.009G102000 Gossypium raimondii HOM05D007197 ORTHO05D009064 9.2e-101 370.9 327 59.6
Lj3g0013433 Lotus japonicus HOM05D007197 ORTHO05D009064 9.2e-101 370.9 314 60.5
CsaV3_6G022120 Cucumis sativus L. HOM05D007197 ORTHO05D009064 1.2e-100 370.5 337 59.6
FAN21G2562 Fragaria x ananassa HOM05D007197 ORTHO05D009064 1.6e-100 370.2 338 57.7
Solyc11g073220.3 Solanum lycopersicum HOM05D007197 ORTHO05D009064 2.9e-99 365.9 313 59.4
Aqoxy4G03051 Aquilegia oxysepala HOM05D007197 ORTHO05D009064 1.9e-98 363.2 317 59.0
PSO206G0023 Papaver somniferum HOM05D007197 ORTHO05D009064 2.8e-97 359.4 319 58.0
Lalb_Chr19g0137651 Lupinus albus HOM05D007197 ORTHO05D009064 3.6e-97 359.0 316 60.1
HanXRQChr11g0340311 Helianthus annuus HOM05D007197 ORTHO05D009064 3.1e-96 355.9 314 58.0
Manes.11G135500 Manihot esculenta HOM05D007197 ORTHO05D009064 4.0e-96 355.5 317 58.4
ClCG02G020670 Citrullus lanatus HOM05D007197 ORTHO05D009064 8.9e-96 354.4 386 53.1
TPR.G1052 Trifolium pratense HOM05D007197 ORTHO05D009064 8.9e-96 354.4 313 58.1
DCAR_018914 Daucus carota HOM05D007197 ORTHO05D009064 2.0e-95 353.2 319 58.6
Medtr4g062540 Medicago truncatula HOM05D007197 ORTHO05D009064 5.8e-95 351.7 314 57.6
Prupe.6G066800 Prunus persica HOM05D007197 ORTHO05D009064 2.2e-94 349.7 273 68.5
Migut.N02658 Erythranthe guttata HOM05D007197 ORTHO05D009064 8.3e-94 347.8 317 57.7
arahy.Tifrunner.gnm1.ann1.EBM8RS Arachis hypogaea HOM05D007197 ORTHO05D009064 3.2e-93 345.9 309 58.6
arahy.Tifrunner.gnm1.ann1.RPJA1V Arachis hypogaea HOM05D007197 ORTHO05D009064 2.0e-92 343.2 309 58.3
EL10Ac7g15954 Beta vulgaris HOM05D007197 ORTHO05D009064 8.6e-91 337.8 336 54.8
Nitab4.5_0003179g0070 Nicotiana tabacum HOM05D007197 ORTHO05D009064 3.3e-90 335.9 334 52.7
AUR62041290 Chenopodium quinoa HOM05D007197 ORTHO05D009064 4.3e-90 335.5 316 56.3
AT1G07745 Arabidopsis thaliana HOM05D007197 ORTHO05D009064 4.7e-89 332.0 316 54.4
Ca_19199_v3 Cicer arietinum L. HOM05D007197 ORTHO05D009064 6.2e-89 331.6 285 61.4
Sp1g06430 Schrenkiella parvula HOM05D007197 ORTHO05D009064 1.4e-88 330.5 317 55.8
Carub.0001s0710 Capsella rubella HOM05D007197 ORTHO05D009064 3.1e-88 329.3 321 54.2
ATR0033G040 Amborella trichopoda HOM05D007197 ORTHO05D009064 1.5e-87 327.0 320 53.8
A08p35470 Brassica napus HOM05D007197 ORTHO05D009064 2.2e-86 323.2 319 54.9
BraA08t35453Z Brassica rapa HOM05D007197 ORTHO05D009064 2.2e-86 323.2 319 54.9
AUR62034127 Chenopodium quinoa HOM05D007197 ORTHO05D009064 6.4e-86 321.6 320 55.3
THA.LOC104800640 Tarenaya hassleriana HOM05D007197 ORTHO05D009064 7.8e-84 314.7 319 53.6
BolC8t47130H Brassica oleracea HOM05D007197 ORTHO05D009064 1.5e-82 310.5 319 53.0
C08p03340 Brassica napus HOM05D007197 ORTHO05D009064 7.3e-82 308.1 310 53.9
SGA_v2.0_scaffold257G45723 Striga asiatica HOM05D007197 ORTHO05D009064 6.4e-78 295.0 263 58.9
BcaB03g13374 Brassica carinata HOM05D007197 ORTHO05D009064 1.1e-77 294.3 304 53.3
Thhalv10008243m.g Eutrema salsugineum HOM05D007197 ORTHO05D009064 7.1e-77 291.6 306 53.9
Hma1.2p1_0056F.1_g031656 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 3.5e-76 289.3 194 76.3
PSO339G6612 Papaver somniferum HOM05D007197 ORTHO05D009064 3.0e-75 286.2 258 58.1
Hma1.2p1_0846F.1_g227720 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 5.1e-75 285.4 232 65.5
Lsat_1_v5_gn_5_166580 Lactuca sativa HOM05D001223 ORTHO05D001058 8.6e-75 284.6 260 56.9
Peaxi162Scf00406g00019 Petunia axillaris HOM05D007197 ORTHO05D009064 3.1e-72 276.2 299 49.8
Sed0002926 Sechium edule HOM05D007197 ORTHO05D009064 5.2e-72 275.4 245 59.6
Nn2g16045 Nelumbo nucifera HOM05D007197 ORTHO05D009064 2.4e-69 266.5 235 60.9
vmacro14499 Vaccinium macrocarpon HOM05D007197 ORTHO05D009064 7.1e-69 265.0 268 57.5
Gohir.D05G098400 Gossypium hirsutum HOM05D007197 ORTHO05D009064 1.3e-67 260.8 241 57.3
AL1G17970 Arabidopsis lyrata HOM05D007197 ORTHO05D009064 3.3e-66 256.1 255 53.7
FvH4_3g34810 Fragaria vesca HOM05D007197 ORTHO05D009064 2.8e-65 253.1 238 58.0
Hund18943 Selenicereus undatus HOM05D007197 ORTHO05D009064 2.6e-63 246.5 260 55.0
SHI05980 Sapria himalayana HOM05D000723 ORTHO05D001626 8.4e-62 241.5 261 51.0
MBI14_g30584_MAGBIO Magnolia biondii HOM05D007197 ORTHO05D009064 4.2e-61 239.2 225 57.8
Zm00001eb329200 Zea mays HOM05D007197 ORTHO05D009064 1.6e-60 237.3 251 49.8
CARHR007550 Cardamine hirsuta HOM05D007197 ORTHO05D009064 7.9e-60 235.0 236 53.8
Nn2g16043 Nelumbo nucifera HOM05D007197 ORTHO05D009064 1.3e-59 234.2 222 58.6
Sc12g0001730 Simmondsia chinensis HOM05D007197 ORTHO05D009064 9.3e-53 211.5 219 52.5
Os09g0104200 Oryza sativa ssp. japonica HOM05D007197 ORTHO05D009064 1.2e-52 211.1 224 50.0
Mapoly0014s0028 Marchantia polymorpha HOM05D007197 ORTHO05D009064 7.4e-50 201.8 296 40.2
Cpa.g.sc252.16 Carica papaya HOM05D007197 ORTHO05D009064 5.3e-48 195.7 168 61.3
vmacro14500 Vaccinium macrocarpon HOM05D007197 ORTHO05D009064 5.8e-47 192.2 113 81.4
AagrBONN_evm.TU.Sc2ySwM_228.390 Anthoceros agrestis HOM05D007197 ORTHO05D009064 1.7e-46 190.7 309 37.5
Psat7g220240 Pisum sativum HOM05D007197 ORTHO05D009064 2.9e-46 189.9 184 56.0
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 1.4e-40 171.0 351 36.2
Pp3c23_10930 Physcomitrium patens HOM05D007197 ORTHO05D009064 9.3e-37 158.3 225 43.1
unitig_0.g1024 Utricularia gibba HOM05D007197 ORTHO05D009064 1.2e-36 157.9 349 32.1
Actinidia20464 Actinidia chinensis HOM05D007197 ORTHO05D009064 1.3e-33 147.9 150 56.0
MCO16G347 Micromonas commoda HOM05D007197 ORTHO05D009064 5.9e-31 139.0 292 35.6
HPP92_017953 Vanilla planifolia HOM05D007197 ORTHO05D009064 7.7e-31 138.7 124 50.0
PGSC0003DMG400015539 Solanum tuberosum HOM05D001223 ORTHO05D001058 2.5e-29 133.7 142 49.3
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 7.2e-29 132.1 97 63.9
SMO358G0138 Selaginella moellendorffii HOM05D007197 ORTHO05D009064 6.1e-28 129.0 239 32.6
Glyma.11G143700 Glycine max HOM05D007197 ORTHO05D009064 1.8e-27 127.5 129 51.9
COL.COLO4_29025 Corchorus olitorius HOM05D007197 ORTHO05D009064 4.8e-25 119.4 85 65.9
SMO142G0018 Selaginella moellendorffii HOM05D007197 ORTHO05D009064 3.1e-24 116.7 213 32.4
HPP92_018064 Vanilla planifolia HOM05D007197 ORTHO05D009064 7.7e-23 112.1 198 35.9
PRCOL_00004125 Prasinoderma coloniale HOM05D007197 ORTHO05D009064 7.4e-18 95.5 310 29.7
Cre03.g184651 Chlamydomonas reinhardtii HOM05D007197 ORTHO05D009064 2.0e-15 87.4 241 31.5
SEGI_26959 Sequoiadendron giganteum HOM05D007197 ORTHO05D009064 7.7e-15 85.5 78 51.3
Eucgr.K01871 Eucalyptus grandis HOM05D007197 ORTHO05D009064 6.5e-14 82.4 70 57.1
Ah.08g214890 Amaranthus hybridus HOM05D007197 ORTHO05D009064 3.6e-12 76.6 56 64.3
Hma1.2p1_3525F.1_g336560 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 1.0e-11 75.1 43 69.8
TPR.G6878 Trifolium pratense HOM05D000917 ORTHO05D000764 1.5e-10 71.2 76 51.3
Pp3c20_7190 Physcomitrium patens HOM05D001363 ORTHO05D002212 9.7e-10 68.6 256 29.3
CsaV3_6G021820 Cucumis sativus L. HOM05D007288 ORTHO05D009200 6.3e-09 65.9 229 27.1
CBR_g8885 Chara braunii HOM05D001363 ORTHO05D002212 1.1e-08 65.1 242 27.3
Hma1.2p1_0861F.1_g229670 Hydrangea macrophylla HOM05D007288 ORTHO05D009200 1.1e-08 65.1 229 26.6
Hma1.2p1_0861F.1_g229675 Hydrangea macrophylla HOM05D007288 ORTHO05D009200 1.1e-08 65.1 229 26.6
ClCG02G020790 Citrullus lanatus HOM05D007288 ORTHO05D009200 5.3e-08 62.8 230 26.5
PRCOL_00001374 Prasinoderma coloniale HOM05D001363 ORTHO05D002212 7.0e-08 62.4 191 28.3
Os02g0562100 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D006255 2.0e-07 60.8 246 28.9
BraA03t10591Z Brassica rapa HOM05D001363 ORTHO05D006255 7.7e-07 58.9 249 25.3
A03p12830 Brassica napus HOM05D001363 ORTHO05D006255 1.3e-06 58.2 249 24.9
SalBow3G3212 Salvia bowleyana HOM05D007288 ORTHO05D009200 1.3e-06 58.2 199 27.6
Cre02.g102500 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D008648 1.7e-06 57.8 246 26.4
Gohir.D07G098000 Gossypium hirsutum HOM05D007288 ORTHO05D009200 2.2e-06 57.4 280 23.6
MCO07G081 Micromonas commoda HOM05D001363 ORTHO05D002212 2.2e-06 57.4 282 24.5
Cre02.g141846 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D002212 6.5e-06 55.8 204 27.0
ECA248G2408 Erigeron canadensis HOM05D007288 ORTHO05D009200 6.5e-06 55.8 225 28.0
Nn2g16044 Nelumbo nucifera HOM05D007197 ORTHO05D009064 6.5e-06 55.8 29 79.3


User provided reference genes

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