Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 2.5e-170 602.1 307 100.0
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 2.3e-131 472.6 235 100.0
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.8e-128 463.0 293 82.9
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.2e-119 433.7 303 72.9
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.3e-118 430.3 397 61.5
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 1.2e-113 413.7 319 68.3
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.5e-106 390.2 306 64.4
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 2.5e-106 389.4 305 65.9
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 6.2e-105 384.8 304 65.5
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 2.6e-103 379.4 312 66.3
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 6.4e-102 374.8 314 63.7
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 1.9e-101 373.2 303 64.7
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 2.7e-100 369.4 300 64.0
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 1.3e-99 367.1 318 61.0
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.3e-99 367.1 302 63.2
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 3.0e-99 365.9 305 62.3
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 5.1e-99 365.2 312 61.5
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 6.6e-99 364.8 305 62.3
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 3.3e-98 362.5 305 61.6
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 3.3e-98 362.5 311 60.5
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 4.3e-98 362.1 307 61.9
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 7.3e-98 361.3 312 60.3
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 2.1e-97 359.8 298 62.4
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 2.8e-97 359.4 312 60.6
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 6.2e-97 358.2 308 62.0
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 1.1e-96 357.5 297 62.6
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.1e-96 357.5 305 61.0
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 1.4e-96 357.1 298 61.4
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 1.8e-96 356.7 297 62.3
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 3.1e-96 355.9 302 62.3
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 7.6e-95 351.3 311 59.8
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 9.9e-95 350.9 310 59.0
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 8.4e-94 347.8 297 59.3
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 3.2e-93 345.9 307 60.3
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 5.4e-93 345.1 312 59.0
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 3.5e-92 342.4 324 57.7
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 3.5e-92 342.4 305 59.7
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.7e-91 340.1 287 60.3
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 3.9e-91 339.0 287 60.3
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 5.1e-91 338.6 277 65.3
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 5.1e-91 338.6 277 65.0
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 2.1e-89 333.2 306 57.5
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 2.1e-89 333.2 305 59.3
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 4.8e-89 332.0 297 58.9
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 1.4e-88 330.5 308 56.8
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 1.8e-88 330.1 302 60.9
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 4.0e-88 328.9 313 57.2
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 6.4e-86 321.6 303 57.8
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 8.4e-86 321.2 311 57.9
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 5.5e-85 318.5 280 59.6
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 1.2e-84 317.4 318 56.0
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.6e-84 317.0 299 55.9
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 4.6e-84 315.5 303 55.1
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 7.4e-82 308.1 285 60.7
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 4.0e-80 302.4 307 52.4
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 9.0e-80 301.2 304 54.3
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.2e-79 300.8 305 53.8
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.3e-78 297.4 234 62.8
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 3.8e-78 295.8 303 50.8
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 1.9e-77 293.5 301 54.2
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 2.5e-77 293.1 291 55.7
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 5.5e-77 292.0 242 59.9
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 9.3e-77 291.2 305 52.5
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 1.2e-76 290.8 306 52.9
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.2e-76 290.8 304 53.0
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.3e-75 287.3 289 56.1
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 3.0e-75 286.2 306 51.6
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.0e-75 286.2 317 52.7
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.5e-74 283.9 304 52.6
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 1.5e-74 283.9 315 51.1
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 9.0e-72 274.6 304 51.0
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 2.9e-70 269.6 306 50.7
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 2.9e-70 269.6 298 50.0
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 3.8e-70 269.2 299 49.8
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 1.1e-69 267.7 322 48.4
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 1.1e-69 267.7 305 49.8
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 9.3e-69 264.6 281 51.6
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 1.6e-68 263.8 306 50.0
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 2.1e-68 263.5 252 55.2
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 1.0e-67 261.2 274 56.2
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 3.0e-67 259.6 233 60.9
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 2.5e-66 256.5 220 58.6
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 9.7e-66 254.6 308 47.7
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 4.8e-65 252.3 217 58.5
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 8.2e-65 251.5 217 58.5
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 8.2e-65 251.5 305 47.2
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.4e-64 250.0 300 44.0
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 6.9e-64 248.4 289 50.2
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 1.5e-63 247.3 314 47.5
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 4.5e-63 245.7 268 51.5
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 7.7e-63 245.0 309 46.6
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 7.7e-63 245.0 246 55.7
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 1.7e-62 243.8 271 50.9
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 5.0e-62 242.3 271 51.3
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 6.7e-59 231.9 300 41.3
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 8.8e-59 231.5 274 50.7
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 2.6e-58 229.9 271 50.2
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 3.3e-58 229.6 267 47.6
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.3e-57 227.6 312 44.9
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.4e-56 224.2 305 43.0
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 1.2e-55 221.1 222 50.0
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.5e-50 204.1 324 42.6
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 7.4e-50 201.8 241 49.4
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 9.7e-50 201.4 137 66.4
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 8.2e-49 198.4 239 49.8
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.5e-46 188.7 296 43.6
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 2.5e-45 186.8 138 65.9
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 4.7e-44 182.6 306 39.5
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 8.0e-44 181.8 191 50.8
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 8.0e-44 181.8 295 40.3
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 3.8e-38 162.9 196 52.6
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 1.1e-37 161.4 222 44.6
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 1.4e-35 154.5 302 34.8
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 3.0e-35 153.3 274 39.8
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.0e-34 150.6 110 62.7
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.9e-30 136.7 101 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 4.2e-29 132.9 258 31.8
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 4.7e-28 129.4 133 50.4
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 7.5e-26 122.1 67 88.1
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 7.5e-26 122.1 67 88.1
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.3e-25 121.3 269 32.0
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 9.2e-24 115.2 120 47.5
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.6e-20 104.4 217 30.4
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 2.3e-19 100.5 94 57.4
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 2.9e-17 93.6 65 64.6
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.2e-12 78.2 116 48.3
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 3.1e-11 73.6 143 34.3
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 9.8e-10 68.6 158 27.8
COL.COLO4_27076 Corchorus olitorius HOM05D005876 ORTHO05D007326 4.6e-07 59.7 103 40.8


User provided reference genes

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