Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011518 Camellia sinensis var. sinensis HOM05D001315 ORTHO05D112070 3.5e-35 151.0 72 100.0
CSS0020318 Camellia sinensis var. sinensis HOM05D001315 ORTHO05D005247 1.1e-23 112.8 103 62.1
Dinv38054 Davidia involucrata HOM05D001315 ORTHO05D001618 1.0e-10 69.7 108 42.6
Zm00001eb386030 Zea mays HOM05D001315 ORTHO05D001618 1.4e-10 69.3 100 43.0
CSS0002173 Camellia sinensis var. sinensis HOM05D001315 ORTHO05D001618 3.3e-09 64.7 104 40.4
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 7.4e-09 63.5 128 36.7
PRCOL_00001015 Prasinoderma coloniale HOM05D001315 ORTHO05D001618 7.4e-09 63.5 107 39.3
Hma1.2p1_0682F.1_g202730 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 9.7e-09 63.2 93 40.9
CSS0023747 Camellia sinensis var. sinensis HOM05D001315 ORTHO05D001618 2.8e-08 61.6 48 64.6
Hund00606 Selenicereus undatus HOM05D001315 ORTHO05D001618 2.8e-08 61.6 129 35.7
CBR_g40885 Chara braunii HOM05D001315 ORTHO05D001618 3.7e-08 61.2 107 40.2
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 1.4e-07 59.3 100 42.0
unitig_52.g17451 Utricularia gibba HOM05D001315 ORTHO05D001618 1.4e-07 59.3 79 46.8
Prupe.3G072200 Prunus persica HOM05D001315 ORTHO05D001618 4.1e-07 57.8 109 38.5
Prupe.I003200 Prunus persica HOM05D001315 ORTHO05D001618 4.1e-07 57.8 109 38.5
Aqoxy7G01801 Aquilegia oxysepala HOM05D001315 ORTHO05D001618 5.3e-07 57.4 65 49.2
Dinv30516 Davidia involucrata HOM05D001315 ORTHO05D001618 5.3e-07 57.4 65 47.7
Ah.01g006040 Amaranthus hybridus HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
Ah.01g021250 Amaranthus hybridus HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
EL10Ac9g21993 Beta vulgaris HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
AUR62016439 Chenopodium quinoa HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
Ca_20396_v3 Cicer arietinum L. HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
Gohir.D03G074500 Gossypium hirsutum HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
Gorai.002G058900 Gossypium raimondii HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
Nn2g11796 Nelumbo nucifera HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
Nn8g39236 Nelumbo nucifera HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
THA.LOC104813562 Tarenaya hassleriana HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
unitig_62.g23602 Utricularia gibba HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
HPP92_022956 Vanilla planifolia HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
HPP92_022994 Vanilla planifolia HOM05D001315 ORTHO05D001618 6.9e-07 57.0 65 50.8
Atru.chr1.3251 Acer truncatum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Actinidia08972 Actinidia chinensis HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Aa31LG8G3130 Aethionema arabicum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
AL1G60610 Arabidopsis lyrata HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
AT1G52360 Arabidopsis thaliana HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
AT1G79990 Arabidopsis thaliana HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
MSTRG.11084 Avicennia marina HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
BcaC08g43990 Brassica carinata HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
C06p13950 Brassica napus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
CANSAT56G2370 Cannabis sativa HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Carub.0001s4136 Capsella rubella HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Carub.0002s2752 Capsella rubella HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
CAN.G395.15 Capsicum annuum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
CAN.G438.61 Capsicum annuum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
CAN.G89.18 Capsicum annuum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Cpa.g.sc2868.1 Carica papaya HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Cfa002058 Carpinus fangiana HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
CiPaw.02G151800 Carya illinoinensis HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
CDE04G2098 Ceratophyllum demersum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
ClCG07G012990 Citrullus lanatus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
ClCG09G002200 Citrullus lanatus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Ciclev10027174m.g Citrus clementina HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Cc04_g03510 Coffea canephora HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
COL.COLO4_30357 Corchorus olitorius HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Haze_16445 Corylus avellana HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
MELO3C012954.2 Cucumis melo HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
MELO3C024225.2 Cucumis melo HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
CsaV3_3G026240 Cucumis sativus L. HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
CsaV3_7G033100 Cucumis sativus L. HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
DCAR_007555 Daucus carota HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Dinv30517 Davidia involucrata HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Dinv36612 Davidia involucrata HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Duzib192G0572 Durio zibethinus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Migut.D01036 Erythranthe guttata HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
FvH4_6g31010 Fragaria vesca HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
FAN02G0089 Fragaria x ananassa HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
FAN05G0812 Fragaria x ananassa HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
FAN09G0485 Fragaria x ananassa HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
FAN14G5153 Fragaria x ananassa HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Glyma.07G034700 Glycine max HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Glyma.08G207300 Glycine max HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Glyma.13G360100 Glycine max HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Glyma.13G360200 Glycine max HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Glyma.15G013800 Glycine max HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gohir.A05G127983 Gossypium hirsutum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gohir.A09G083400 Gossypium hirsutum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gohir.A10G079600 Gossypium hirsutum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gohir.D05G128650 Gossypium hirsutum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gohir.D09G083400 Gossypium hirsutum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gohir.D10G071900 Gossypium hirsutum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gorai.006G099000 Gossypium raimondii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gorai.009G132800 Gossypium raimondii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Gorai.011G077300 Gossypium raimondii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
HanXRQChr09g0275361 Helianthus annuus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Lj5C61T10 Lonicera japonica HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Lj3g0017633 Lotus japonicus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Lalb_Chr01g0012581 Lupinus albus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Lalb_Chr04g0262611 Lupinus albus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Lalb_Chr14g0373461 Lupinus albus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Lalb_Chr22g0351211 Lupinus albus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
MD17G1196600 Malus domestica HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Manes.04G122600 Manihot esculenta HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Manes.11G048100 Manihot esculenta HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Nitab4.5_0000351g0180 Nicotiana tabacum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Nitab4.5_0000671g0030 Nicotiana tabacum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Nitab4.5_0002327g0020 Nicotiana tabacum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Nitab4.5_0006801g0050 Nicotiana tabacum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Oeu019542.1 Olea europaea HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Oeu025388.1 Olea europaea HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Oeu051055.1 Olea europaea HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Peaxi162Scf00015g00310 Petunia axillaris HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Peaxi162Scf00034g01011 Petunia axillaris HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Peaxi162Scf00207g00922 Petunia axillaris HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Phvul.010G151200 Phaseolus vulgaris HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Potri.003G056300 Populus trichocarpa HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
QL05p024873 Quercus lobata HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Rhsim08G0220500 Rhododendron simsii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Rhsim12G0197300 Rhododendron simsii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
RcHm_v2.0_Chr2g0137661 Rosa chinensis HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Sabra03G0031700 Salix brachista HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
SalBow2G1973 Salvia bowleyana HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
SalBow2G2475 Salvia bowleyana HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
SHI24408 Sapria himalayana HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Sed0002090 Sechium edule HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Sed0002337 Sechium edule HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Sed0009223 Sechium edule HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Hund06605 Selenicereus undatus HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Sc12g0009250 Simmondsia chinensis HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Solyc06g066730.3 Solanum lycopersicum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Solyc12g043000.3 Solanum lycopersicum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Sopen06g025010 Solanum pennellii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Sopen12g022230 Solanum pennellii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
PGSC0003DMG400028615 Solanum tuberosum HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
SGA_v2.0_scaffold4G01992 Striga asiatica HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
SGA_v2.0_scaffold5G02597 Striga asiatica HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
SGA_v2.0_scaffold68G23010 Striga asiatica HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Thecc.06G085200 Theobroma cacao HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
TWI18G0492 Tripterygium wilfordii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
TWI18G0766 Tripterygium wilfordii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
TWI75G0804 Tripterygium wilfordii HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
TAR383G0836 Trochodendron aralioides HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
vmacro16946 Vaccinium macrocarpon HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
vmacro18920 Vaccinium macrocarpon HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
VMungo0173G0002 Vigna mungo HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
VMungo1080G0964 Vigna mungo HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
GSVIVG01017121001 Vitis vinifera HOM05D001315 ORTHO05D001618 9.1e-07 56.6 65 50.8
Duzib160G0755 Durio zibethinus HOM05D001315 ORTHO05D001618 1.2e-06 56.2 65 50.8
Duzib235G0424 Durio zibethinus HOM05D001315 ORTHO05D001618 1.2e-06 56.2 65 49.2
Gohir.A02G122100 Gossypium hirsutum HOM05D001315 ORTHO05D001618 1.2e-06 56.2 65 50.8
MD06G1184300 Malus domestica HOM05D001315 ORTHO05D001618 1.2e-06 56.2 109 34.9
Oeu033482.1 Olea europaea HOM05D001315 ORTHO05D001618 1.2e-06 56.2 65 49.2
GSVIVG01015415001 Vitis vinifera HOM05D001315 ORTHO05D001618 1.2e-06 56.2 65 50.8
PSO210G3370 Papaver somniferum HOM05D001315 ORTHO05D001618 1.5e-06 55.8 63 50.8
PSO210G6406 Papaver somniferum HOM05D001315 ORTHO05D001618 1.5e-06 55.8 63 50.8
AUR62011624 Chenopodium quinoa HOM05D001315 ORTHO05D001618 2.0e-06 55.5 63 50.8
QL05p024734 Quercus lobata HOM05D001315 ORTHO05D001618 2.0e-06 55.5 109 37.6
QL07p042027 Quercus lobata HOM05D001315 ORTHO05D001618 2.0e-06 55.5 109 35.8
Zm00001eb205430 Zea mays HOM05D001315 ORTHO05D001618 2.0e-06 55.5 62 51.6
Zm00001eb240380 Zea mays HOM05D001315 ORTHO05D001618 2.0e-06 55.5 62 51.6
ATR0037G035 Amborella trichopoda HOM05D001315 ORTHO05D001618 2.6e-06 55.1 65 49.2
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 2.6e-06 55.1 65 49.2
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 2.6e-06 55.1 65 49.2
CARHR074490 Cardamine hirsuta HOM05D001315 ORTHO05D001618 2.6e-06 55.1 65 49.2
CDE05G0005 Ceratophyllum demersum HOM05D001315 ORTHO05D001618 2.6e-06 55.1 65 49.2
Lsat_1_v5_gn_2_61901 Lactuca sativa HOM05D001315 ORTHO05D004199 2.6e-06 55.1 31 74.2
Sp5g35770 Schrenkiella parvula HOM05D001315 ORTHO05D001618 2.6e-06 55.1 63 50.8
CDE05G1801 Ceratophyllum demersum HOM05D001315 ORTHO05D001618 3.4e-06 54.7 65 49.2
Eucgr.J03008 Eucalyptus grandis HOM05D001315 ORTHO05D001618 3.4e-06 54.7 65 49.2
Thhalv10020009m.g Eutrema salsugineum HOM05D001315 ORTHO05D001618 3.4e-06 54.7 65 49.2
Sp3g14330 Schrenkiella parvula HOM05D001315 ORTHO05D001618 3.4e-06 54.7 65 49.2
Thecc.06G085600 Theobroma cacao HOM05D001315 ORTHO05D001618 3.4e-06 54.7 62 50.0
Thecc.06G085800 Theobroma cacao HOM05D001315 ORTHO05D001618 3.4e-06 54.7 62 50.0
Thecc.06G086100 Theobroma cacao HOM05D001315 ORTHO05D001618 3.4e-06 54.7 62 50.0
Aqoxy7G03764 Aquilegia oxysepala HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 47.7
CSS0010008 Camellia sinensis var. sinensis HOM05D001315 ORTHO05D001618 4.5e-06 54.3 109 34.9
CSS0020832 Camellia sinensis var. sinensis HOM05D001315 ORTHO05D001618 4.5e-06 54.3 109 34.9
DCAR_016223 Daucus carota HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
ECA232G3466 Erigeron canadensis HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
ECA247G1000 Erigeron canadensis HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
HanXRQChr04g0096541 Helianthus annuus HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
HanXRQChr14g0455901 Helianthus annuus HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
Lsat_1_v5_gn_1_34861 Lactuca sativa HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
Lsat_1_v5_gn_4_103400 Lactuca sativa HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
Lsat_1_v5_gn_5_130021 Lactuca sativa HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
THA.LOC104810519 Tarenaya hassleriana HOM05D001315 ORTHO05D001618 4.5e-06 54.3 65 49.2
FvH4_6g31020 Fragaria vesca HOM05D001315 ORTHO05D001618 5.9e-06 53.9 107 37.4
FAN05G5420 Fragaria x ananassa HOM05D001315 ORTHO05D001618 5.9e-06 53.9 107 37.4
AL2G41550 Arabidopsis lyrata HOM05D001315 ORTHO05D001618 7.7e-06 53.5 63 49.2
Prupe.I003100 Prunus persica HOM05D001315 ORTHO05D001618 7.7e-06 53.5 109 36.7
SMO361G0308 Selaginella moellendorffii HOM05D001315 ORTHO05D001618 7.7e-06 53.5 65 47.7


User provided reference genes

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