Gene: AT1G79990

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G79990
  • Transcript Identifier AT1G79990.1
  • Gene Type Coding gene
  • Location Chr1 : 30085910-30091949 : positive

Gene Family Information

  • ID HOM05D001315
  • #Genes/#Species 477/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G79990.1
  • uniprot Q9CAA0

Descriptions

  • Description coatomer subunit beta-2
  • Computational description structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0006886
IEA
GOA Databaseintracellular protein transport
GO:0006886
IBA
Gene Ontologyintracellular protein transport1
GO:0006886
IEA
InterProintracellular protein transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006888
IBA
Gene Ontologyendoplasmic reticulum to Golgi vesicle-mediated transport1
GO:0006890
IBA
Gene Ontologyretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum1
GO:0006891
IBA
Gene Ontologyintra-Golgi vesicle-mediated transport1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005198
IEA
Gene Ontologystructural molecule activity
GO:0005198
IEA
InterProstructural molecule activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0030117
IEA
Gene Ontologymembrane coat
GO:0030117
IEA
InterPromembrane coat
GO:0016020
IEA
GOA Databasemembrane
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0030663
IEA
GOA DatabaseCOPI-coated vesicle membrane
GO:0030126
IBA
Gene OntologyCOPI vesicle coat1
GO:0005739
HDA
Gene Ontologymitochondrion2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR001680 WD40 repeat
IPR016453 Coatomer beta' subunit (COPB2)
IPR006692 Coatomer, WD associated region
Mapman id Description
22.2.1.1.2 Vesicle trafficking.Golgi-ER retrograde trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.subunit beta2