Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 2.8e-155 552.0 293 100.0
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 4.6e-142 508.1 293 88.7
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 4.6e-142 508.1 293 88.7
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.3e-141 506.5 293 89.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 5.1e-141 504.6 293 90.1
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 6.7e-141 504.2 274 90.9
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.1e-140 503.4 293 90.4
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.1e-140 503.4 293 89.8
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.9e-140 502.7 274 91.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 5.7e-140 501.1 293 91.8
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 3.7e-139 498.4 274 91.2
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 4.8e-139 498.0 273 90.8
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.1e-138 496.9 294 90.8
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-138 496.9 298 88.3
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.1e-138 496.9 293 89.4
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.4e-138 496.5 274 90.5
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 4.1e-138 495.0 274 91.2
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 6.9e-138 494.2 274 90.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 6.9e-138 494.2 293 87.4
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.2e-137 493.4 274 89.4
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 1.5e-137 493.0 294 89.8
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.5e-137 493.0 275 91.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 2.6e-137 492.3 293 84.0
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 4.5e-137 491.5 293 86.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 4.5e-137 491.5 274 90.1
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 7.7e-137 490.7 274 89.8
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.5e-136 487.3 293 84.3
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.4e-135 486.5 274 89.4
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.4e-135 486.5 274 89.8
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 2.5e-135 485.7 274 90.1
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 2.5e-135 485.7 274 89.4
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.5e-135 484.6 274 89.1
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 7.2e-135 484.2 294 86.7
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.6e-134 483.0 293 85.0
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.7e-134 482.3 293 85.0
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 3.6e-134 481.9 273 85.7
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 3.6e-134 481.9 274 88.0
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 7.9e-134 480.7 274 87.6
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 7.9e-134 480.7 274 87.6
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.9e-133 478.4 298 85.2
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.9e-133 478.4 275 88.4
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.9e-133 478.4 334 75.4
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 6.7e-133 477.6 274 86.9
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.1e-132 476.9 320 82.2
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.1e-132 476.9 295 87.1
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-132 476.5 274 87.6
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 2.0e-132 476.1 274 88.0
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 4.3e-132 474.9 325 80.9
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 7.4e-132 474.2 293 83.6
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 9.7e-132 473.8 289 82.4
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 9.7e-132 473.8 275 86.2
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 1.3e-131 473.4 293 82.6
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.3e-131 473.4 273 88.3
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 8.2e-131 470.7 274 86.1
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 8.2e-131 470.7 274 86.1
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 8.2e-131 470.7 275 85.8
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 8.2e-131 470.7 269 87.4
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 3.1e-130 468.8 312 79.5
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 5.3e-130 468.0 274 86.9
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 5.3e-130 468.0 294 81.0
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.5e-129 464.9 293 81.2
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.5e-129 464.9 293 80.9
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 6.5e-128 461.1 291 80.4
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 6.5e-128 461.1 291 80.4
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.1e-127 460.3 274 84.7
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.9e-127 459.5 299 84.3
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.5e-127 459.1 293 83.3
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 9.4e-127 457.2 276 84.1
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.2e-126 456.8 274 81.8
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 2.7e-126 455.7 274 83.9
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 2.7e-126 455.7 276 83.7
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 6.1e-126 454.5 276 83.3
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.8e-125 453.0 264 87.1
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 1.8e-125 453.0 283 83.4
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 5.1e-125 451.4 276 83.3
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 6.7e-125 451.1 334 75.7
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 6.7e-125 451.1 293 81.2
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 8.8e-125 450.7 283 84.1
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.5e-124 449.9 295 77.3
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.5e-124 449.9 295 81.7
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.5e-124 449.9 274 83.6
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 4.4e-124 448.4 294 80.6
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 7.4e-124 447.6 298 79.9
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.8e-123 445.7 294 81.0
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 3.7e-123 445.3 311 74.9
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 3.7e-123 445.3 316 75.9
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 4.8e-123 444.9 274 79.9
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 4.8e-123 444.9 328 74.4
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 8.2e-123 444.1 276 79.7
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 8.2e-123 444.1 293 80.2
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.4e-122 443.4 294 80.6
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.4e-122 443.4 294 80.6
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 9.1e-122 440.7 274 79.9
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.0e-121 439.5 311 73.6
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.6e-121 439.1 283 80.6
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 7.7e-121 437.6 298 75.5
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.0e-120 437.2 274 80.3
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.5e-119 432.6 281 82.2
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 4.2e-119 431.8 294 74.8
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 9.4e-119 430.6 274 80.3
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 9.4e-119 430.6 274 80.3
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.8e-117 426.4 265 76.6
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.2e-115 419.5 278 75.9
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 3.7e-115 418.7 278 75.5
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 4.8e-115 418.3 278 75.9
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.5e-113 412.1 274 74.8
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 4.7e-110 401.7 234 87.6
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 6.1e-110 401.4 224 89.7
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.1e-106 389.0 266 72.6
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.2e-105 387.1 225 85.8
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 5.9e-105 384.8 293 73.0
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.1e-103 380.6 293 72.4
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 8.0e-102 374.4 274 73.0
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.8e-101 373.2 276 71.4
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.0e-96 357.5 242 74.8
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.9e-95 353.2 205 86.3
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.9e-91 338.6 240 69.6
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.0e-88 328.6 280 61.1
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.5e-87 327.0 190 86.3
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.9e-87 326.6 282 61.0
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 7.3e-87 324.7 232 76.3
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.5e-87 324.3 248 67.7
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 1.4e-85 320.5 282 60.3
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.3e-85 319.7 268 64.6
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.9e-85 317.8 206 80.6
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 7.5e-84 314.7 181 87.3
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 5.4e-82 308.5 295 56.9
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.7e-80 303.5 202 70.8
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 6.8e-77 291.6 181 80.1
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 2.7e-73 279.6 265 55.8
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 5.6e-71 271.9 246 65.0
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 7.5e-68 261.5 190 69.5
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.5e-63 246.5 146 85.6
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 3.0e-48 196.4 116 86.2
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.8e-46 189.9 97 94.8
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 6.9e-45 185.3 105 85.7
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 9.0e-45 184.9 116 81.9
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 4.2e-42 176.0 141 73.0
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 1.0e-40 171.4 115 75.7
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.9e-40 169.5 260 40.0
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 2.5e-39 166.8 105 80.0
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.6e-36 155.2 98 92.9
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.3e-35 154.5 94 80.9
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.6e-33 147.5 104 81.7
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 3.9e-32 142.9 267 33.0
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 1.1e-31 141.4 79 87.3
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.4e-29 134.4 218 40.8
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 3.4e-28 129.8 66 93.9
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 5.0e-27 125.9 118 60.2
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 5.0e-27 125.9 118 60.2
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.1e-26 124.8 118 61.0
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.9e-26 124.0 105 65.7
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 5.5e-26 122.5 249 32.5
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 7.1e-26 122.1 118 58.5
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 7.1e-26 122.1 118 58.5
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 9.3e-26 121.7 118 59.3
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.0e-24 118.2 118 58.5
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.0e-24 118.2 258 31.8
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 3.0e-24 116.7 118 57.6
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 4.8e-22 109.4 155 41.9
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 6.3e-22 109.0 155 41.3
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 9.0e-21 105.1 155 41.3
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 3.8e-19 99.8 83 65.1
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-15 87.8 44 97.7
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.1e-13 81.6 51 72.5
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 4.5e-12 76.3 42 85.7


User provided reference genes

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