Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.3e-172 609.8 334 100.0
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.4e-142 510.0 331 81.0
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.5e-141 505.0 290 88.3
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.9e-139 499.6 330 80.0
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 1.9e-131 473.0 396 71.0
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 4.6e-130 468.4 332 75.0
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.3e-129 466.8 331 75.2
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.0e-129 465.7 318 75.8
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 1.9e-128 463.0 328 75.0
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.3e-128 462.2 312 77.6
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 7.4e-128 461.1 333 73.3
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.8e-127 459.1 314 76.8
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 4.8e-127 458.4 331 73.1
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 1.1e-126 457.2 327 75.8
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.1e-126 457.2 325 77.5
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 6.9e-126 454.5 329 73.6
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 9.0e-126 454.1 331 71.6
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 2.6e-125 452.6 331 71.3
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 3.4e-125 452.2 331 71.9
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 7.7e-125 451.1 330 72.7
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.3e-124 450.3 330 73.0
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 1.7e-124 449.9 320 72.2
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 2.9e-124 449.1 313 73.2
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 2.9e-124 449.1 326 72.7
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.4e-123 446.8 320 77.2
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 3.2e-123 445.7 312 72.8
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 3.2e-123 445.7 331 74.6
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 5.5e-123 444.9 332 72.3
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 9.4e-123 444.1 314 72.9
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 9.4e-123 444.1 330 72.1
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 9.4e-123 444.1 292 78.1
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 9.4e-123 444.1 331 71.9
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.2e-122 443.7 329 71.4
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 1.6e-122 443.4 320 71.6
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.7e-122 442.6 329 75.1
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.9e-122 441.0 329 71.1
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.0e-121 440.7 331 70.4
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.8e-121 439.9 330 69.7
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 3.0e-121 439.1 325 71.7
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.9e-121 438.7 325 71.1
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 3.9e-121 438.7 330 70.6
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.9e-121 438.7 329 70.2
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 3.9e-121 438.7 320 72.8
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.1e-120 437.2 341 68.6
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 2.5e-120 436.0 325 74.8
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 3.3e-120 435.6 307 73.0
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 4.3e-120 435.3 310 73.9
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.7e-119 433.3 330 69.7
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 4.8e-119 431.8 360 67.5
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 6.3e-119 431.4 288 74.7
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.1e-118 430.6 326 69.0
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 2.4e-118 429.5 329 69.9
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 4.1e-118 428.7 327 69.7
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 5.9e-117 424.9 326 69.0
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 5.9e-117 424.9 322 69.3
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 7.7e-117 424.5 337 71.5
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.3e-116 423.7 316 73.1
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.2e-116 422.9 283 74.6
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 3.8e-116 422.2 351 67.8
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.4e-115 420.2 328 69.2
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.4e-115 420.2 287 74.2
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.9e-115 419.9 323 69.3
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 3.2e-115 419.1 412 57.5
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 3.2e-115 419.1 324 69.4
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 5.5e-115 418.3 331 71.9
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.5e-115 418.3 317 69.4
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 7.2e-115 417.9 317 69.4
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 9.4e-115 417.5 317 69.4
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 9.4e-115 417.5 321 73.8
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.7e-114 416.0 333 67.0
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.6e-114 415.6 316 69.3
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.7e-114 415.2 328 67.7
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 7.9e-114 414.5 338 70.1
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.0e-113 414.1 322 67.1
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.4e-113 413.7 345 68.1
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.4e-113 413.7 322 69.3
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.3e-113 412.9 328 67.4
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 6.7e-113 411.4 328 67.4
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 6.7e-113 411.4 338 69.2
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 8.8e-113 411.0 315 69.5
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 8.8e-113 411.0 328 67.1
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 8.8e-113 411.0 346 67.3
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.1e-112 410.6 288 71.9
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.1e-112 410.6 323 67.2
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.6e-112 409.5 314 70.4
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 4.4e-112 408.7 318 68.6
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 4.4e-112 408.7 321 66.4
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 5.7e-112 408.3 322 66.8
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.7e-111 406.8 314 68.5
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 6.3e-111 404.8 329 66.6
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 8.2e-111 404.4 327 67.6
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 3.1e-110 402.5 323 65.9
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 9.1e-110 401.0 314 68.2
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 9.1e-110 401.0 314 68.2
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.2e-109 400.6 318 66.7
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.2e-109 400.6 333 65.2
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.2e-109 400.6 321 68.2
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.6e-109 400.2 310 67.1
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 2.0e-109 399.8 329 66.0
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.5e-109 399.1 318 66.4
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.5e-109 398.7 285 70.2
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 7.7e-109 397.9 320 70.3
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.0e-108 397.5 331 65.0
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-107 393.7 323 65.6
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.5e-107 393.7 323 65.6
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.5e-107 391.7 295 68.1
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.2e-106 390.6 314 66.9
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-106 390.2 288 69.8
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-106 389.8 314 66.9
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.1e-106 389.8 315 67.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 4.7e-106 388.7 315 66.0
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.0e-105 387.5 314 66.6
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 1.4e-105 387.1 290 67.6
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 4.0e-105 385.6 314 66.2
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 6.7e-105 384.8 370 60.0
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 4.4e-104 382.1 314 66.2
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.7e-104 381.7 254 75.2
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 5.7e-104 381.7 335 61.5
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 4.8e-103 378.6 319 65.2
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-102 376.7 332 62.7
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 9.1e-102 374.4 318 61.3
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.5e-101 372.1 290 66.2
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 5.9e-101 371.7 300 67.7
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.7e-95 353.6 351 59.3
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.2e-93 347.4 388 53.9
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 2.9e-92 342.8 320 60.6
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 8.5e-92 341.3 326 57.1
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 5.2e-89 332.0 316 60.1
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 2.4e-86 323.2 288 60.8
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 3.3e-83 312.8 336 54.5
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 3.3e-83 312.8 288 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.6e-82 309.3 286 58.4
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 8.0e-82 308.1 323 56.0
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.6e-80 303.1 321 56.1
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 6.4e-79 298.5 315 57.1
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 1.4e-73 280.8 252 58.7
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.2e-72 277.7 178 79.2
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.6e-72 276.6 336 51.8
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 2.2e-71 273.5 167 83.8
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 1.2e-69 267.7 283 53.7
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 3.5e-69 266.2 335 49.6
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 4.7e-66 255.8 287 52.6
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.3e-65 253.4 222 65.3
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-58 230.3 270 53.7
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 3.1e-57 226.5 250 56.0
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 6.4e-55 218.8 152 71.7
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.5e-53 213.0 192 66.1
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.8e-49 200.7 135 78.5
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-47 193.7 190 61.1
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.9e-46 190.7 292 43.2
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 6.6e-44 182.2 161 65.8
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.1e-42 177.2 151 68.2
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 6.4e-39 165.6 121 77.7
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 3.8e-31 139.8 139 59.7
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 4.9e-31 139.4 311 34.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 4.6e-29 132.9 290 35.5
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.9e-22 110.9 76 69.7
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.5e-22 110.5 99 61.6
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.1e-21 107.5 79 64.6
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 2.5e-19 100.5 61 86.9
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 2.8e-18 97.1 99 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.8e-15 86.7 89 51.7
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 8.2e-10 68.9 43 72.1
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.4e-09 68.2 39 87.2
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 4.5e-08 63.2 112 40.2
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.9e-06 57.8 52 61.5
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.9e-06 57.8 50 62.0
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 2.5e-06 57.4 57 54.4


User provided reference genes

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