Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.6e-111 406.4 242 100.0
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.9e-105 385.6 242 93.8
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.3e-102 376.7 242 92.1
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 2.3e-102 375.9 242 91.3
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.0e-102 375.6 242 91.7
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.9e-101 372.9 242 81.4
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 4.4e-98 361.7 243 83.5
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 5.8e-98 361.3 242 86.8
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 5.8e-98 361.3 242 86.4
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 7.6e-98 360.9 242 87.6
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 9.9e-98 360.5 228 94.3
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.3e-97 360.1 242 88.8
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.9e-96 356.3 242 87.2
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 5.4e-96 354.8 241 85.9
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 9.2e-96 354.0 238 87.4
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 9.2e-96 354.0 243 76.5
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.6e-95 353.2 242 86.4
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 2.7e-95 352.4 228 89.0
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 6.0e-95 351.3 241 85.9
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.3e-94 349.4 240 84.6
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 3.9e-94 348.6 241 86.3
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 6.6e-94 347.8 242 81.4
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.6e-94 347.4 243 79.8
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.1e-93 347.1 243 80.2
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.9e-93 346.3 242 84.3
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.9e-93 346.3 242 81.8
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.5e-93 345.9 243 79.4
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.5e-93 345.9 243 83.5
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.6e-93 344.7 242 78.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 9.6e-93 344.0 242 84.7
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.2e-92 343.6 242 84.3
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.2e-92 343.6 241 83.8
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.6e-92 343.2 242 83.9
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.1e-92 342.8 243 78.2
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.8e-92 342.4 242 74.0
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.8e-92 342.4 242 81.0
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 3.6e-92 342.0 242 76.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 3.6e-92 342.0 199 88.9
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.7e-92 341.7 242 84.3
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 4.7e-92 341.7 241 82.6
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.1e-91 340.5 246 74.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.8e-91 339.7 241 80.1
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.4e-91 339.3 242 82.6
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 2.4e-91 339.3 243 72.4
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.4e-91 339.3 199 87.4
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.4e-91 339.3 243 77.4
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 83.9
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 5.2e-91 338.2 241 78.8
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 6.8e-91 337.8 241 81.3
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 6.8e-91 337.8 242 80.2
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 8.9e-91 337.4 241 73.0
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.5e-90 336.7 242 83.5
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.0e-90 336.3 241 79.7
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.6e-90 335.9 241 80.5
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.6e-90 335.9 241 80.5
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 3.4e-90 335.5 205 82.9
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 5.8e-90 334.7 241 79.7
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 5.8e-90 334.7 206 81.6
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 5.8e-90 334.7 237 74.3
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.3e-89 333.6 241 79.7
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 77.3
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 78.1
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 3.8e-89 332.0 245 72.7
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 6.4e-89 331.3 243 79.8
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 6.4e-89 331.3 242 73.1
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.9e-88 329.7 240 71.2
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 72.3
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.4e-88 329.3 240 72.5
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.2e-88 328.9 243 74.9
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.2e-88 328.6 243 74.5
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 7.1e-88 327.8 242 71.9
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 7.1e-88 327.8 242 72.7
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.2e-87 327.0 243 79.0
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.6e-87 326.6 242 71.5
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.6e-87 326.6 241 71.0
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.6e-87 326.6 242 74.4
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.1e-87 326.2 236 80.1
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.5e-87 325.5 207 80.7
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.0e-87 324.7 206 79.6
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.8e-87 324.3 243 72.8
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.8e-87 324.3 243 74.5
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 7.8e-87 324.3 252 69.8
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.7e-86 323.2 233 79.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.7e-86 323.2 205 81.5
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.3e-86 322.8 241 77.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 3.0e-86 322.4 243 72.4
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.0e-86 322.4 243 72.0
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 8.7e-86 320.9 209 79.9
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.1e-85 320.5 243 72.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 4.3e-85 318.5 210 90.5
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.6e-85 318.2 243 71.6
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 2.1e-84 316.2 229 79.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.8e-84 315.1 241 68.9
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 8.1e-84 314.3 243 76.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.1e-83 313.9 201 80.1
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.1e-83 312.4 227 77.1
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 5.3e-83 311.6 243 75.7
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 9.0e-83 310.8 241 69.3
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.2e-82 310.5 194 80.9
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.6e-82 309.3 205 76.1
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 9.9e-82 307.4 245 74.3
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 2.2e-81 306.2 241 66.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.9e-81 305.8 241 77.6
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.4e-80 303.5 243 74.9
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.9e-80 303.1 244 73.8
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 5.4e-80 301.6 206 76.7
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.2e-79 300.4 207 75.8
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.1e-79 299.7 207 75.4
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 6.0e-79 298.1 243 65.4
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 6.6e-78 294.7 208 74.0
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.5e-77 293.5 208 72.1
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.5e-77 292.7 208 71.6
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 9.6e-77 290.8 183 80.9
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.1e-76 289.7 208 71.6
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.1e-75 287.3 208 70.7
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.4e-75 287.0 178 80.9
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 3.1e-75 285.8 208 71.2
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.5e-74 283.5 208 68.8
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.5e-74 283.5 208 68.8
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 7.6e-74 281.2 208 68.3
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 7.6e-74 281.2 208 68.3
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.8e-73 278.9 192 75.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.6e-71 273.5 227 63.4
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.6e-71 273.5 203 68.0
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.4e-64 250.4 192 67.2
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.3e-60 237.3 191 67.0
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 5.3e-59 231.9 157 74.5
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 3.8e-57 225.7 206 62.6
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 6.5e-57 224.9 205 61.0
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.2e-49 199.9 133 75.2
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.6e-47 193.7 170 64.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.3e-45 186.0 111 79.3
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 9.1e-43 177.9 206 54.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 8.5e-41 171.4 176 53.4
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.8e-38 163.7 173 52.6
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.5e-34 149.4 105 67.6
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 9.7e-29 131.3 185 41.1
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.8e-27 127.1 92 70.7
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.1e-27 125.9 86 69.8
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.4e-19 100.9 91 74.7
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 6.5e-17 92.0 181 32.0
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.2e-15 87.8 56 78.6
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.7e-15 86.7 54 83.3
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.2e-12 77.0 180 31.1


User provided reference genes

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