Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011071 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 6.0e-58 227.3 111 100.0
CSS0037734 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 2.3e-33 145.6 104 76.0
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 4.5e-13 78.2 48 79.2
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 1.3e-12 76.6 45 84.4
CANSAT80G0779 Cannabis sativa HOM05D003395 ORTHO05D004087 2.9e-12 75.5 44 84.1
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 2.9e-12 75.5 44 84.1
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 2.9e-12 75.5 44 84.1
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 2.9e-12 75.5 44 84.1
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 2.9e-12 75.5 44 84.1
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 2.9e-12 75.5 44 84.1
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 81.8
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 81.8
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 81.8
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 81.8
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 81.8
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 3.8e-12 75.1 44 84.1
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 5.0e-12 74.7 44 81.8
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 5.0e-12 74.7 43 83.7
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 5.0e-12 74.7 44 81.8
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 5.0e-12 74.7 43 86.0
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 5.0e-12 74.7 44 81.8
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 5.0e-12 74.7 44 81.8
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 5.0e-12 74.7 44 81.8
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 5.0e-12 74.7 44 81.8
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 5.0e-12 74.7 44 84.1
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 6.5e-12 74.3 44 81.8
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 6.5e-12 74.3 44 81.8
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 6.5e-12 74.3 44 81.8
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 8.5e-12 73.9 44 81.8
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 8.5e-12 73.9 44 81.8
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 8.5e-12 73.9 44 81.8
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 8.5e-12 73.9 44 81.8
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 8.5e-12 73.9 44 81.8
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 8.5e-12 73.9 47 76.6
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 8.5e-12 73.9 44 81.8
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 1.1e-11 73.6 46 78.3
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 1.1e-11 73.6 46 78.3
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 1.1e-11 73.6 46 78.3
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 1.1e-11 73.6 46 78.3
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
FvH4_4g17140 Fragaria vesca HOM05D003395 ORTHO05D020046 1.1e-11 73.6 50 70.0
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 79.5
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 79.5
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 1.1e-11 73.6 44 81.8
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 1.4e-11 73.2 44 79.5
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 1.4e-11 73.2 44 79.5
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.4e-11 73.2 44 79.5
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.4e-11 73.2 44 79.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.4e-11 73.2 44 79.5
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 1.4e-11 73.2 47 76.6
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 1.4e-11 73.2 44 79.5
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 1.4e-11 73.2 44 79.5
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 1.9e-11 72.8 44 79.5
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.9e-11 72.8 44 79.5
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 1.9e-11 72.8 44 81.8
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 1.9e-11 72.8 44 81.8
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.9e-11 72.8 44 79.5
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 2.5e-11 72.4 44 77.3
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 2.5e-11 72.4 44 79.5
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 2.5e-11 72.4 44 77.3
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 2.5e-11 72.4 42 83.3
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 5.5e-11 71.2 44 77.3
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 5.5e-11 71.2 42 83.3
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 5.5e-11 71.2 44 77.3
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 7.2e-11 70.9 44 77.3
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 7.2e-11 70.9 44 77.3
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 7.2e-11 70.9 44 77.3
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 7.2e-11 70.9 45 80.0
Gohir.A03G107600 Gossypium hirsutum HOM05D003395 ORTHO05D004087 9.4e-11 70.5 46 73.9
FAN12G3185 Fragaria x ananassa HOM05D003395 ORTHO05D020046 1.6e-10 69.7 50 68.0
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 3.6e-10 68.6 44 72.7
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 4.6e-10 68.2 44 81.8
Sabra18G0065400 Salix brachista HOM05D003395 ORTHO05D004087 6.1e-10 67.8 44 75.0
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 7.9e-10 67.4 44 72.7
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 2.3e-09 65.9 44 70.5
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 9.7e-08 60.5 44 61.4
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.7e-07 59.7 34 82.4
FAN12G1311 Fragaria x ananassa HOM05D003395 ORTHO05D020046 2.2e-07 59.3 50 62.0
BcaB06g29194 Brassica carinata HOM05D003395 ORTHO05D020046 5.3e-06 54.7 30 86.7


User provided reference genes

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