Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.6e-150 534.3 270 100.0
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 5.4e-129 464.5 270 87.8
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.3e-127 459.1 270 84.8
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 2.5e-126 455.7 270 85.2
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.3e-126 455.3 270 83.3
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 2.6e-123 445.7 270 83.3
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 6.4e-122 441.0 283 80.6
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 2.1e-120 436.0 271 81.2
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.7e-119 433.0 269 79.6
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 1.5e-118 429.9 269 81.4
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 8.1e-117 424.1 271 80.4
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.0e-116 420.6 285 76.5
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.9e-114 415.6 276 77.5
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 4.9e-114 414.8 271 78.2
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 6.4e-114 414.5 271 76.4
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 6.4e-114 414.5 256 84.4
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 8.4e-114 414.1 273 78.8
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 8.4e-114 414.1 273 77.7
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.4e-113 413.3 273 76.9
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.9e-113 412.9 270 77.8
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.4e-113 411.4 271 77.5
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 7.1e-113 411.0 270 76.3
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 9.3e-113 410.6 271 76.4
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 1.2e-112 410.2 273 76.9
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 1.6e-112 409.8 270 77.4
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.1e-112 409.5 272 77.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.1e-112 409.5 273 76.2
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 4.6e-112 408.3 271 77.1
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 4.6e-112 408.3 270 75.9
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 6.0e-112 407.9 270 77.4
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 6.0e-112 407.9 271 76.8
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.0e-111 407.1 271 77.5
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 1.3e-111 406.8 270 76.3
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.3e-111 406.8 272 76.8
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 2.3e-111 406.0 283 72.8
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 3.0e-111 405.6 271 74.9
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 5.1e-111 404.8 271 75.6
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 5.1e-111 404.8 271 76.4
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 5.1e-111 404.8 270 75.9
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 6.6e-111 404.4 270 75.6
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.1e-110 403.7 272 77.9
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.1e-110 403.7 270 76.7
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.9e-110 402.9 270 77.4
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 1.9e-110 402.9 272 75.7
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.9e-110 402.9 270 76.3
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 2.5e-110 402.5 271 75.6
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 2.5e-110 402.5 272 75.0
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 3.3e-110 402.1 272 76.8
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 3.3e-110 402.1 274 75.2
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 4.3e-110 401.7 272 75.7
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 4.3e-110 401.7 270 75.9
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.3e-110 401.7 273 75.1
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 5.6e-110 401.4 271 75.6
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 5.6e-110 401.4 270 77.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 7.3e-110 401.0 271 74.5
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 9.6e-110 400.6 272 75.4
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 1.3e-109 400.2 270 75.6
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.3e-109 400.2 274 75.2
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 1.6e-109 399.8 273 74.4
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 2.8e-109 399.1 271 76.0
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 4.8e-109 398.3 296 69.9
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 6.2e-109 397.9 271 74.2
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 1.1e-108 397.1 271 74.9
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.4e-108 396.7 271 73.4
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.4e-108 396.7 271 73.4
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.8e-108 396.4 273 74.0
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.8e-108 396.4 273 74.0
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 2.4e-108 396.0 270 75.2
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 2.4e-108 396.0 272 73.9
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 3.1e-108 395.6 271 74.5
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 4.0e-108 395.2 270 76.7
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.3e-108 394.8 282 73.4
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.3e-108 394.8 273 74.0
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 3.4e-107 392.1 293 69.3
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 5.8e-107 391.3 274 73.0
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.6e-107 391.0 271 72.3
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 9.9e-107 390.6 272 75.0
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 2.2e-106 389.4 298 70.1
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.2e-106 389.4 259 77.6
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.9e-106 389.0 271 72.0
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.9e-106 389.0 271 72.0
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 6.4e-106 387.9 271 73.4
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 6.4e-106 387.9 272 72.8
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 1.4e-105 386.7 285 71.2
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.2e-105 385.2 271 74.5
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 5.4e-105 384.8 255 76.5
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 9.3e-105 384.0 271 72.0
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 1.2e-104 383.6 271 71.2
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.7e-104 382.5 271 72.0
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 3.5e-104 382.1 272 71.3
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.6e-104 381.7 271 72.0
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.3e-103 380.2 273 74.0
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 1.8e-103 379.8 273 73.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.0e-103 379.0 274 72.6
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 5.1e-103 378.3 271 70.5
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 6.7e-103 377.9 330 62.4
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 8.7e-103 377.5 343 60.6
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 8.7e-103 377.5 306 65.4
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 8.7e-103 377.5 306 65.4
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 4.3e-102 375.2 274 70.8
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 7.4e-102 374.4 273 71.1
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 7.4e-102 374.4 273 71.1
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 1.5e-99 366.7 270 70.7
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.4e-97 360.1 270 68.1
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 2.5e-97 359.4 236 77.5
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 7.1e-97 357.8 270 69.3
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 7.1e-97 357.8 234 77.8
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 2.1e-96 356.3 270 68.1
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 1.0e-95 354.0 272 69.5
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.8e-95 353.2 272 69.1
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 3.0e-95 352.4 331 59.5
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.3e-93 347.1 275 67.6
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 2.1e-93 346.3 273 67.4
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.8e-93 345.9 230 76.5
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 4.8e-93 345.1 230 75.2
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 6.2e-93 344.7 272 68.8
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 8.2e-93 344.4 230 75.2
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 2.4e-92 342.8 318 60.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 5.3e-92 341.7 273 65.9
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.5e-91 340.1 272 65.1
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.4e-91 339.0 272 65.1
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 5.8e-91 338.2 276 66.7
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 7.6e-91 337.8 232 75.0
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.9e-89 333.2 231 72.3
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 4.2e-89 332.0 230 73.9
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 8.7e-87 324.3 267 63.7
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 1.1e-84 317.4 361 53.5
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.4e-84 316.2 270 65.2
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 5.3e-84 315.1 278 62.9
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.7e-83 311.2 196 81.6
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 5.5e-81 305.1 261 63.6
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.2e-80 303.9 337 51.9
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.0e-79 299.3 277 60.6
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 1.1e-78 297.4 231 67.5
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 5.7e-78 295.0 267 60.3
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 7.4e-78 294.7 232 67.7
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.2e-75 287.3 284 57.7
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 4.5e-75 285.4 229 65.5
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.0e-74 284.3 270 58.9
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 6.1e-72 275.0 231 64.9
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 3.5e-67 259.2 201 68.2
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 3.5e-67 259.2 276 54.3
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 4.2e-65 252.3 181 70.7
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.2e-65 252.3 267 53.9
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.7e-64 249.6 260 53.1
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 5.2e-63 245.4 174 70.1
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 5.2e-63 245.4 260 52.7
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.7e-61 239.2 254 55.9
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.8e-61 238.8 176 68.8
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 6.3e-61 238.4 173 72.3
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.8e-60 236.9 270 53.0
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.4e-60 236.5 162 74.7
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 8.5e-58 228.0 169 69.8
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 7.2e-57 224.9 130 84.6
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 2.3e-55 219.9 162 69.1
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.0e-54 216.9 201 61.7
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 2.8e-53 213.0 161 68.9
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.8e-52 210.3 214 58.4
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 1.9e-49 200.3 154 68.2
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 7.5e-46 188.3 235 48.1
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 8.3e-45 184.9 126 72.2
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.1e-44 184.5 151 67.5
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 8.6e-42 174.9 133 69.2
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.5e-41 173.3 232 46.1
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.2e-40 171.0 182 53.3
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.2e-38 164.5 162 56.2
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.1e-36 156.0 139 60.4
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 1.7e-34 150.6 271 40.6
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 4.4e-30 136.0 87 77.0
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 5.4e-28 129.0 91 73.6
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 5.0e-26 122.5 149 51.7
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 1.9e-25 120.6 74 81.1
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.3e-23 113.6 64 84.4
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 4.0e-23 112.8 150 46.0
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.5e-22 110.9 67 79.1
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 4.9e-21 105.9 74 73.0
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.1e-16 90.5 137 43.8
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.0e-10 71.6 34 94.1
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.0e-07 59.7 42 69.0
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 1.2e-06 58.2 42 69.0
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.2e-06 58.2 126 35.7


User provided reference genes

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