Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1445.3 716 100.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1412.9 699 99.9
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1203.7 700 85.0
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 0.0e+00 1158.7 716 80.4
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1150.2 699 79.3
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1142.5 699 78.8
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 0.0e+00 1125.2 737 75.2
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1123.6 700 77.3
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1115.9 700 77.7
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1115.5 700 77.7
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1100.5 699 77.0
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1098.6 698 76.9
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1096.6 701 77.2
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 0.0e+00 1092.0 700 77.9
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1084.7 698 76.1
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1076.2 697 75.9
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 9.8e-312 1072.8 697 76.2
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 4.8e-310 1067.4 703 75.5
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 6.3e-310 1067.0 700 73.7
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.8e-309 1065.4 702 74.5
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 7.0e-309 1063.5 706 74.2
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 2.0e-308 1062.0 712 74.3
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 5.9e-308 1060.4 701 74.6
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 7.2e-306 1053.5 707 74.5
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.6e-305 1052.4 708 74.2
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 3.6e-305 1051.2 702 74.1
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 8.0e-305 1050.0 700 73.7
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.3e-304 1048.5 704 74.1
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 3.7e-302 1041.2 717 72.9
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 7.0e-301 1036.9 701 71.8
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 4.5e-300 1034.2 700 72.3
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.3e-299 1032.7 699 72.1
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.9e-299 1031.6 703 73.0
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.1e-298 1029.6 697 72.5
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 7.2e-298 1026.9 701 71.9
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 2.1e-297 1025.4 700 71.6
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 1.0e-296 1023.1 706 72.8
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.3e-296 1021.9 706 72.4
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 6.8e-296 1020.4 738 69.2
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 3.4e-295 1018.1 702 71.7
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.4e-295 1018.1 645 78.3
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 4.9e-294 1014.2 702 71.7
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.4e-293 1010.7 703 71.7
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.0e-291 1004.2 700 71.0
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.6e-291 1003.8 701 71.3
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.6e-291 1003.8 700 71.3
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.2e-289 999.6 717 71.0
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 4.4e-287 991.1 701 70.0
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 4.4e-287 991.1 700 70.0
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.8e-287 990.7 740 67.8
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 4.1e-285 984.6 713 69.1
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 4.6e-284 981.1 700 70.4
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 4.6e-284 981.1 700 69.6
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 7.8e-284 980.3 701 69.0
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 9.5e-282 973.4 705 68.1
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 6.2e-281 970.7 676 71.9
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.4e-280 969.5 700 68.0
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.1e-280 968.4 713 68.3
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 4.0e-280 968.0 756 66.7
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.2e-280 967.6 700 69.0
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.2e-280 967.6 700 69.1
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.4e-279 964.9 711 68.1
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 3.4e-279 964.9 700 68.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 9.8e-279 963.4 711 68.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.7e-278 962.6 712 69.7
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 6.4e-278 960.7 703 69.3
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.2e-276 956.4 708 68.6
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 6.0e-276 954.1 703 66.7
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.0e-275 953.4 712 68.5
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.3e-275 953.0 712 68.3
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.3e-275 952.2 711 67.8
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.9e-275 951.4 712 68.3
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 8.6e-275 950.3 712 68.1
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.5e-274 949.5 715 66.9
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.9e-274 949.1 698 68.9
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.5e-274 948.7 708 67.2
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 4.3e-274 948.0 723 66.4
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 5.6e-274 947.6 698 67.3
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 9.5e-274 946.8 703 67.3
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.5e-274 946.8 713 67.3
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 9.5e-274 946.8 698 67.3
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.7e-273 944.5 708 66.2
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 6.2e-273 944.1 699 65.8
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.4e-272 943.0 714 66.5
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 4.0e-272 941.4 709 67.1
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 7.6e-271 937.2 709 67.3
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 7.6e-271 937.2 704 66.1
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.9e-270 935.3 741 64.8
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 3.5e-268 928.3 708 66.0
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 4.6e-268 927.9 708 66.0
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 7.8e-268 927.2 702 69.2
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-267 926.4 708 65.8
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.3e-267 926.4 708 65.8
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.3e-267 926.4 712 66.9
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.3e-267 925.6 504 89.5
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 2.3e-267 925.6 700 66.0
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.3e-267 925.6 706 65.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.5e-266 922.9 708 65.7
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.5e-266 922.2 702 66.8
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 2.5e-266 922.2 704 66.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 6.2e-265 917.5 702 66.2
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.1e-264 916.8 699 67.1
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 4.0e-264 914.8 707 65.5
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 5.2e-264 914.4 701 65.8
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.2e-263 913.3 701 64.9
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.3e-262 909.8 736 63.3
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 2.2e-262 909.1 699 64.8
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.9e-262 908.7 705 65.4
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.8e-262 908.3 701 65.9
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 4.2e-261 904.8 713 64.0
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 9.3e-261 903.7 700 66.3
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-259 899.8 702 65.1
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 7.3e-258 894.0 702 65.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.5e-255 886.3 703 64.3
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.0e-255 885.9 709 63.8
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.9e-254 882.1 713 63.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.9e-254 881.3 705 62.3
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 8.4e-254 880.6 699 64.2
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.1e-253 880.2 703 63.6
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 1.4e-253 879.8 699 64.1
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.4e-253 879.8 702 63.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.9e-253 879.4 703 63.7
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 4.6e-252 874.8 699 63.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 2.3e-251 872.5 699 63.2
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 8.7e-251 870.5 713 63.4
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 5.6e-250 867.8 705 63.1
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.8e-249 865.5 699 62.9
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.3e-248 861.3 707 61.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 5.8e-247 857.8 597 70.4
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.2e-244 850.1 710 61.8
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 4.6e-244 848.2 698 61.6
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 2.1e-241 839.3 708 61.2
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 6.0e-236 821.2 695 58.8
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 7.9e-236 820.8 711 60.9
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 2.5e-234 815.8 697 60.7
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.9e-229 799.7 704 58.0
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 3.2e-229 798.9 704 58.7
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 2.1e-228 796.2 711 57.5
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 5.7e-226 788.1 708 57.9
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 8.5e-222 774.2 727 57.6
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.5e-218 763.5 696 56.5
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 2.5e-218 762.7 690 58.6
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 3.3e-202 709.1 600 63.2
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 4.4e-186 655.6 690 52.2
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.2e-156 557.8 784 40.9
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.8e-155 553.9 300 90.7
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 6.2e-148 528.9 408 64.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.4e-147 526.9 778 40.7
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.4e-144 517.7 742 39.6
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.1e-141 508.1 802 39.3
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.0e-139 499.6 298 83.6
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.9e-137 493.4 455 57.1
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 4.6e-127 459.5 783 37.5
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.3e-126 458.0 322 72.0
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.1e-119 434.1 646 40.9
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 1.8e-94 351.3 265 67.5
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.8e-86 324.7 386 47.2
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 5.2e-86 323.2 318 52.5
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 4.4e-77 293.5 159 85.5
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 3.6e-71 273.9 252 58.7
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.4e-67 260.0 548 33.0
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.7e-63 246.9 127 90.6
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 7.0e-59 233.0 810 26.2
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 1.9e-48 198.4 205 53.7
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.3e-48 197.6 131 71.0
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 6.2e-47 193.4 122 76.2
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 9.9e-45 186.0 210 52.4
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.7e-42 177.9 200 53.0
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 1.0e-41 176.0 98 79.6
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.0e-41 174.5 111 79.3
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.8e-38 165.2 549 27.9
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 8.4e-36 156.4 103 75.7
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.4e-35 155.6 438 29.2
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 7.3e-32 143.3 666 24.3
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.0e-29 135.2 75 81.3
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 1.4e-22 112.5 93 62.4
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 7.1e-19 100.1 66 68.2
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.9e-16 92.0 66 66.7
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 3.3e-08 64.7 41 68.3
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 7.4e-08 63.5 102 36.3


User provided reference genes

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