Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.7e-79 297.0 157 100.0
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-64 250.0 154 87.7
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.2e-49 198.4 112 90.2
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-48 196.8 112 90.2
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 2.1e-48 196.1 107 90.7
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 4.6e-48 194.9 107 88.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.4e-47 193.4 107 88.8
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.8e-47 193.0 112 87.5
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.8e-47 193.0 112 87.5
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.3e-47 192.6 120 81.7
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.1e-47 191.4 112 86.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 5.1e-47 191.4 107 87.9
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 5.1e-47 191.4 107 87.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 6.7e-47 191.0 107 87.9
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 8.8e-47 190.7 107 88.8
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 8.8e-47 190.7 107 87.9
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.1e-46 190.3 120 81.7
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.0e-46 189.5 108 88.0
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 2.0e-46 189.5 107 87.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.6e-46 189.1 107 87.9
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.3e-46 188.7 107 87.9
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 3.3e-46 188.7 107 86.0
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.3e-46 188.7 107 87.9
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 3.3e-46 188.7 107 87.9
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 3.3e-46 188.7 107 86.9
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 4.4e-46 188.3 107 86.0
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 4.4e-46 188.3 107 86.0
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 4.4e-46 188.3 107 87.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 4.4e-46 188.3 107 87.9
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.7e-46 188.0 107 86.9
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 5.7e-46 188.0 108 84.3
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 7.4e-46 187.6 107 85.0
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 7.4e-46 187.6 107 85.0
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 7.4e-46 187.6 107 86.0
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 7.4e-46 187.6 108 84.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 7.4e-46 187.6 120 80.0
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 9.7e-46 187.2 107 85.0
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 9.7e-46 187.2 125 79.2
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 9.7e-46 187.2 107 86.9
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.3e-45 186.8 107 86.9
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.3e-45 186.8 120 78.3
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.3e-45 186.8 107 85.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.3e-45 186.8 112 84.8
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.7e-45 186.4 107 85.0
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.2e-45 186.0 120 79.2
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.2e-45 186.0 107 86.0
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 2.8e-45 185.7 120 80.0
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 2.8e-45 185.7 107 86.9
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-45 185.7 107 86.9
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 2.8e-45 185.7 125 78.4
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.8e-45 185.7 104 86.5
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 3.7e-45 185.3 107 85.0
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 3.7e-45 185.3 120 79.2
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 3.7e-45 185.3 120 79.2
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.7e-45 185.3 120 79.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 3.7e-45 185.3 125 78.4
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.8e-45 184.9 107 86.0
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.3e-45 184.5 163 64.4
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 6.3e-45 184.5 107 84.1
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 6.3e-45 184.5 107 84.1
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 6.3e-45 184.5 108 83.3
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 8.2e-45 184.1 107 84.1
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 8.2e-45 184.1 107 84.1
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.2e-45 184.1 107 86.9
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.1e-44 183.7 107 83.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.1e-44 183.7 107 85.0
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.1e-44 183.7 107 85.0
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.1e-44 183.7 108 82.4
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-44 183.7 107 86.9
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.4e-44 183.3 120 77.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.8e-44 183.0 120 77.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.4e-44 182.6 107 84.1
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 2.4e-44 182.6 118 78.8
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 4.1e-44 181.8 107 84.1
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 4.1e-44 181.8 120 78.3
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 4.1e-44 181.8 120 76.7
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.1e-44 181.8 120 77.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 4.1e-44 181.8 163 63.8
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 5.3e-44 181.4 108 81.5
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 5.3e-44 181.4 120 77.5
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 5.3e-44 181.4 120 77.5
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 6.9e-44 181.0 107 83.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 9.1e-44 180.6 120 76.7
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 9.1e-44 180.6 163 62.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.2e-43 180.3 107 84.1
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.2e-43 180.3 116 77.6
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.0e-43 179.5 144 68.8
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 2.6e-43 179.1 163 63.8
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.6e-43 179.1 107 84.1
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.9e-43 177.9 107 80.4
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 7.7e-43 177.6 163 63.2
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.0e-42 177.2 112 81.2
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.0e-42 177.2 113 79.6
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.0e-42 177.2 105 81.0
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.0e-42 177.2 105 81.0
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.0e-42 177.2 105 81.0
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.3e-42 176.8 120 75.0
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.3e-42 176.8 120 75.0
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.7e-42 176.4 105 81.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.7e-42 176.4 105 81.0
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 2.2e-42 176.0 105 80.0
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.2e-42 176.0 105 80.0
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.2e-42 176.0 105 80.0
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.8e-42 175.3 120 74.2
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 5.0e-42 174.9 107 81.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 8.5e-42 174.1 105 78.1
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 8.5e-42 174.1 107 77.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.4e-41 173.3 163 62.0
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.4e-41 173.3 107 77.6
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.9e-41 172.9 105 79.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.9e-41 172.9 105 79.0
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.9e-41 172.9 105 77.1
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.9e-41 172.9 105 79.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.9e-41 172.9 105 79.0
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.9e-41 172.9 105 77.1
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.9e-41 172.9 105 79.0
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.9e-41 172.9 103 79.6
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 5.5e-41 171.4 105 78.1
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 9.4e-41 170.6 105 76.2
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.8e-39 166.4 105 74.3
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.0e-39 165.6 125 66.4
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 3.9e-39 165.2 125 65.6
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.1e-38 163.7 125 66.4
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 6.1e-32 141.4 112 64.3
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.2e-30 137.1 107 58.9
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.6e-30 136.0 105 61.0
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.3e-30 135.6 105 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.4e-30 135.2 104 61.5
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.8e-28 129.8 107 60.7
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.9e-26 122.5 109 56.9
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.9e-26 122.5 68 89.7
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.7e-24 115.9 80 76.2
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.8e-23 110.9 65 83.1
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.7e-21 106.7 121 50.4
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.1e-17 94.0 50 90.0
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 5.5e-17 91.7 49 89.8
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 8.0e-16 87.8 53 75.5
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.0e-15 87.4 108 42.6
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 7.0e-12 74.7 40 85.0
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.5e-09 67.0 37 78.4
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.3e-09 65.9 110 35.5
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 5.2e-07 58.5 68 42.6
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 5.8e-06 55.1 101 32.7
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 9.8e-06 54.3 68 39.7


User provided reference genes

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