Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1468.0 739 100.0
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1375.9 739 95.1
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1278.8 736 87.9
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1249.6 739 85.5
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1228.8 761 82.5
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1226.1 761 82.5
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1211.1 735 83.0
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1204.5 740 82.2
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1200.3 730 81.9
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1196.4 741 81.9
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1192.9 741 82.5
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1187.2 741 82.5
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1186.0 854 74.5
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1185.2 741 81.6
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1180.2 735 81.8
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1176.8 723 83.0
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1176.4 741 81.0
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1175.6 721 82.4
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1174.8 743 81.2
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1174.1 735 81.6
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1173.3 733 81.3
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1173.3 738 80.8
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1171.4 738 80.5
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1167.9 739 81.6
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1167.5 732 80.9
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1167.1 740 80.0
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1165.6 742 81.4
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1164.1 738 79.9
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1161.7 945 67.6
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1155.6 737 80.9
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1153.3 737 80.7
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1152.9 701 82.3
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1152.1 740 80.1
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1148.7 737 79.2
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1145.2 731 80.8
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1143.3 712 81.5
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1143.3 732 78.7
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1142.5 740 79.2
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1142.5 662 85.5
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1141.7 735 80.7
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1140.2 775 76.4
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1139.8 727 79.2
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1139.8 733 78.7
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1139.0 736 79.3
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1138.3 687 82.2
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1138.3 728 79.8
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1137.9 740 78.4
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1135.9 775 76.1
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1135.6 796 73.1
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1135.6 796 73.1
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1134.0 704 82.0
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1131.7 736 78.7
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1130.2 754 78.6
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1129.0 725 79.2
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1118.6 717 81.0
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1115.5 670 83.1
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 728 77.5
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1104.4 736 77.0
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1101.7 767 75.0
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1097.8 737 76.5
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1096.6 733 76.9
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1091.3 657 82.6
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1091.3 823 70.8
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1090.9 660 81.7
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1090.9 735 76.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1090.9 750 76.4
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1090.5 723 76.1
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 738 76.2
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 659 80.6
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 737 76.0
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1089.3 738 76.2
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1085.9 743 77.0
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1085.5 753 75.0
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1082.8 695 79.3
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1082.8 695 79.3
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 0.0e+00 1082.4 809 71.4
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1075.8 743 76.3
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 5.1e-312 1073.9 730 76.3
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 2.5e-309 1065.1 728 76.4
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.7e-305 1052.4 771 72.1
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 7.0e-304 1047.0 742 74.1
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 3.8e-302 1041.2 801 70.4
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 4.1e-296 1021.1 682 77.4
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 3.9e-286 988.0 677 73.4
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.8e-283 979.2 649 73.5
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.3e-281 973.0 581 82.8
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 8.9e-275 950.3 641 73.2
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 5.8e-274 947.6 579 84.1
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.4e-267 926.4 543 84.9
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.3e-267 925.6 579 80.8
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 2.0e-266 922.5 664 71.7
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 3.4e-266 921.8 541 83.5
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 7.5e-266 920.6 541 84.7
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 3.7e-265 918.3 541 84.1
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.4e-264 916.4 579 80.7
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 2.5e-261 905.6 633 70.6
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.2e-256 888.3 605 75.4
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 9.2e-256 887.1 614 74.1
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 5.1e-254 881.3 661 67.2
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.3e-241 840.1 721 60.6
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.7e-233 813.1 526 79.3
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.2e-233 812.8 528 79.7
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 6.1e-223 778.1 626 62.9
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 6.7e-222 774.6 520 76.9
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 2.9e-193 679.5 401 85.8
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 1.1e-192 677.6 388 83.5
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 4.4e-181 639.0 421 75.3
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.6e-178 630.6 366 84.2
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 2.0e-173 613.6 415 74.7
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 6.2e-159 565.5 369 79.4
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.8e-140 503.1 461 61.0
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.6e-127 461.1 686 39.4
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 4.0e-126 456.4 613 41.4
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.1e-112 411.8 382 59.2
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 2.2e-108 397.5 695 36.8
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 2.5e-107 394.0 385 56.6
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 7.7e-101 372.5 520 41.9
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.4e-97 361.7 223 83.0
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 6.9e-94 349.4 349 55.9
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 4.1e-78 297.0 183 82.5
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 4.4e-72 276.9 161 82.6
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 7.3e-59 233.0 162 66.7
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 2.8e-58 231.1 205 65.9
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 5.2e-57 226.9 214 55.1
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 8.9e-49 199.5 114 88.6
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 2.0e-48 198.4 256 49.2
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 8.9e-41 172.9 182 49.5
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 8.3e-39 166.4 105 75.2
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.4e-38 164.9 263 42.2
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 6.6e-36 156.8 84 90.5
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 5.6e-35 153.7 112 66.1
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 2.1e-34 151.8 139 59.7
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 8.1e-34 149.8 113 67.3
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 6.8e-33 146.7 91 81.3
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 6.8e-33 146.7 95 72.6
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 7.6e-32 143.3 83 83.1
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 2.4e-30 138.3 71 83.1
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 1.6e-29 135.6 90 74.4
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 1.5e-27 129.0 87 71.3
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 3.5e-21 107.8 60 81.7
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 9.0e-17 93.2 47 83.0
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 2.2e-15 88.6 48 81.2
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.2e-14 84.7 75 58.7
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 6.0e-13 80.5 77 54.5
SEGI_19526 Sequoiadendron giganteum HOM05D005018 ORTHO05D043556 9.3e-06 56.6 28 85.7


User provided reference genes

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