Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009858 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 5.6e-223 777.3 399 100.0
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 4.2e-202 708.0 371 99.2
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 2.2e-155 552.7 370 78.9
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 3.7e-150 535.4 369 76.4
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 1.8e-144 516.5 371 74.1
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 3.0e-144 515.8 370 73.2
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 1.8e-141 506.5 371 72.5
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 2.4e-141 506.1 371 72.5
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 5.3e-141 505.0 369 72.1
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 2.6e-140 502.7 353 73.7
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 1.1e-138 497.3 364 70.3
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 4.7e-137 491.9 346 72.0
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 2.8e-134 482.6 369 66.4
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 1.1e-133 480.7 384 69.3
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 1.6e-132 476.9 371 69.0
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 8.5e-131 471.1 370 70.3
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 4.7e-129 465.3 357 67.2
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 3.0e-128 462.6 384 66.1
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 1.2e-127 460.7 370 68.1
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 7.5e-127 458.0 366 67.8
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 9.8e-127 457.6 369 66.9
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 9.8e-127 457.6 354 67.8
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 8.3e-126 454.5 371 66.6
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 1.1e-125 454.1 389 64.8
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 1.1e-125 454.1 369 65.3
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 1.8e-125 453.4 382 65.4
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 9.1e-125 451.1 370 64.9
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 9.1e-125 451.1 411 62.3
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 2.0e-124 449.9 387 63.0
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 3.5e-124 449.1 352 67.0
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 3.5e-124 449.1 376 65.2
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 4.5e-124 448.7 371 63.9
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 4.5e-124 448.7 370 65.7
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 7.7e-124 448.0 372 65.1
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 7.7e-124 448.0 354 67.2
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 1.7e-123 446.8 366 64.2
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 2.9e-123 446.0 372 64.8
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 3.8e-123 445.7 370 64.9
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 3.8e-123 445.7 387 62.8
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 1.5e-122 443.7 367 67.0
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 1.9e-122 443.4 386 61.9
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 5.6e-122 441.8 386 61.7
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 1.6e-121 440.3 372 64.0
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 2.8e-121 439.5 385 63.1
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 4.7e-121 438.7 332 69.0
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 3.4e-119 432.6 373 62.5
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 7.5e-119 431.4 370 61.9
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 9.8e-119 431.0 376 61.7
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 1.7e-118 430.3 385 60.8
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 1.7e-118 430.3 372 63.4
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 2.9e-118 429.5 374 62.3
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 8.3e-118 427.9 372 61.8
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 1.8e-117 426.8 369 62.9
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 1.8e-117 426.8 372 64.2
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 2.4e-117 426.4 377 60.5
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 4.1e-117 425.6 379 63.3
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 9.2e-117 424.5 393 60.3
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 1.6e-116 423.7 348 64.7
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 4.6e-116 422.2 372 63.7
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 7.8e-116 421.4 377 62.9
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 7.8e-116 421.4 377 62.9
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 5.0e-115 418.7 360 61.4
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.1e-114 417.5 377 62.6
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.3e-114 415.6 370 60.3
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 4.3e-114 415.6 378 59.8
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 6.2e-113 411.8 377 62.1
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.4e-112 410.6 370 61.4
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 3.1e-112 409.5 350 61.4
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 3.1e-112 409.5 348 62.6
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 6.8e-112 408.3 345 60.6
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 6.8e-112 408.3 345 60.6
AUR62003293 Chenopodium quinoa HOM05D003128 ORTHO05D004333 2.6e-111 406.4 320 66.6
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 1.3e-110 404.1 369 62.9
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 2.2e-110 403.3 370 58.6
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 3.2e-109 399.4 377 59.4
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 9.2e-109 397.9 358 60.9
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 3.5e-108 396.0 373 60.6
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 2.6e-103 379.8 331 58.3
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 9.8e-103 377.9 371 58.2
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 9.8e-103 377.9 371 57.7
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 3.7e-102 375.9 373 57.1
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 4.9e-102 375.6 373 57.1
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 4.9e-102 375.6 384 56.2
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.1e-101 374.4 464 48.5
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.9e-101 373.6 368 58.7
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 2.4e-101 373.2 373 57.1
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 3.2e-101 372.9 368 59.0
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 4.1e-101 372.5 374 58.3
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 9.2e-101 371.3 384 55.5
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 1.2e-100 370.9 384 55.7
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 1.2e-100 370.9 384 55.5
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.6e-100 370.5 386 55.7
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 2.1e-100 370.2 384 56.0
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 2.1e-100 370.2 384 56.0
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 4.6e-100 369.0 367 55.9
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.0e-99 367.9 353 57.2
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.0e-99 367.9 371 56.1
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 2.3e-99 366.7 372 55.9
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 5.1e-99 365.5 368 56.0
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 1.1e-98 364.4 371 56.6
HPP92_027494 Vanilla planifolia HOM05D003128 ORTHO05D004333 7.3e-98 361.7 370 55.9
Sc07g0006790 Simmondsia chinensis HOM05D003128 ORTHO05D004333 1.2e-97 360.9 370 54.6
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.8e-97 359.8 338 58.6
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.1e-96 357.8 370 55.4
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.4e-96 357.5 380 57.1
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 4.0e-96 355.9 339 57.2
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 5.2e-96 355.5 311 65.0
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 2.0e-95 353.6 374 54.5
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 3.4e-95 352.8 374 54.5
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 3.4e-95 352.8 356 53.9
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 8.4e-94 348.2 358 54.5
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 1.4e-93 347.4 344 54.9
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 9.2e-93 344.7 369 54.2
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 2.1e-92 343.6 368 54.6
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 4.6e-92 342.4 353 52.7
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 5.1e-91 339.0 370 50.0
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 1.1e-90 337.8 396 51.8
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.7e-89 332.4 355 52.7
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.4e-87 325.9 370 51.6
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 5.8e-87 325.5 337 48.4
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 1.7e-86 323.9 383 46.5
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 2.2e-86 323.6 366 53.6
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 2.9e-86 323.2 342 52.9
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 7.8e-84 315.1 257 63.0
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 1.2e-79 301.2 366 47.3
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.3e-75 287.0 357 46.8
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.5e-74 283.5 271 58.7
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 3.3e-74 283.1 319 48.6
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.3e-74 283.1 347 48.1
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 4.3e-74 282.7 409 43.5
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 1.2e-71 274.6 399 43.1
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 1.7e-70 270.8 337 46.3
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 5.1e-67 259.2 305 51.8
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 8.7e-67 258.5 356 44.9
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 9.6e-66 255.0 355 44.2
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.4e-64 251.1 370 43.5
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 2.7e-60 236.9 370 40.8
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 1.3e-59 234.6 282 45.7
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 5.7e-58 229.2 375 40.8
Rhsim07G0045000 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.3e-57 228.0 207 61.4
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 1.3e-57 228.0 370 40.3
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 2.1e-57 227.3 225 50.2
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 2.8e-57 226.9 293 44.7
CsaV3_1G042320 Cucumis sativus L. HOM05D003128 ORTHO05D001951 1.6e-52 211.1 279 43.0
arahy.Tifrunner.gnm1.ann1.31C5CF Arachis hypogaea HOM05D003128 ORTHO05D004333 8.7e-51 205.3 174 64.9
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 2.2e-49 200.7 372 37.1
ECA236G2760 Erigeron canadensis HOM05D003128 ORTHO05D004333 2.7e-44 183.7 183 52.5
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 2.7e-44 183.7 273 36.3
SEGI_30432 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 8.8e-43 178.7 213 53.1
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 8.8e-43 178.7 125 65.6
Glyma.14G080000 Glycine max HOM05D003128 ORTHO05D004333 5.3e-40 169.5 171 59.6
Psat1g070640 Pisum sativum HOM05D003128 ORTHO05D004333 2.5e-37 160.6 215 45.6
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 3.2e-37 160.2 125 59.2
ClCG03G013760 Citrullus lanatus HOM05D003128 ORTHO05D004333 2.0e-34 151.0 287 33.8
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 3.3e-34 150.2 156 53.2
C08p48830 Brassica napus HOM05D003128 ORTHO05D024111 1.7e-30 137.9 323 35.6
Cpa.g.c41200 Carica papaya HOM05D003128 ORTHO05D004333 2.0e-26 124.4 112 66.1
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.1e-21 108.6 71 74.6
BolC8t52420H Brassica oleracea HOM05D003128 ORTHO05D024111 3.4e-18 97.1 116 49.1
BcaC07g41819 Brassica carinata HOM05D003128 ORTHO05D024111 3.1e-16 90.5 114 49.1
ECA238G4552 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.7e-15 85.9 171 33.3
CDE08G1262 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 1.7e-14 84.7 79 48.1
RhsimUnG0209100 Rhododendron simsii HOM05D003128 ORTHO05D037442 1.9e-13 81.3 63 68.3
Psat1g070560 Pisum sativum HOM05D003128 ORTHO05D004333 3.7e-09 67.0 48 68.8
Oeu011362.1 Olea europaea HOM05D000060 ORTHO05D003150 5.4e-08 63.2 40 67.5
CAN.G710.4 Capsicum annuum HOM05D003128 ORTHO05D004333 7.0e-08 62.8 55 52.7
C08p48560 Brassica napus HOM05D003128 ORTHO05D004333 7.7e-07 59.3 43 58.1
BolC8t50947H Brassica oleracea HOM05D003128 ORTHO05D004333 7.7e-07 59.3 140 40.7
QL02p014302 Quercus lobata HOM05D000075 ORTHO05D000264 6.6e-06 56.2 44 68.2


User provided reference genes

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