Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 2.9e-196 688.3 339 100.0
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 1.3e-156 556.6 337 81.3
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 8.0e-154 547.4 338 80.2
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 2.7e-149 532.3 332 80.1
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 1.7e-148 529.6 332 79.2
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 7.2e-147 524.2 336 78.9
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 6.8e-145 517.7 314 80.6
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 2.6e-144 515.8 314 79.3
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 1.3e-143 513.5 343 74.9
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 2.8e-143 512.3 329 77.2
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 3.7e-143 511.9 329 76.9
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 4.8e-143 511.5 336 76.5
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 4.8e-143 511.5 340 74.1
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 6.3e-143 511.1 330 76.4
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 7.0e-142 507.7 340 75.0
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 2.0e-141 506.1 331 76.1
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 5.9e-141 504.6 339 74.3
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 1.7e-140 503.1 338 74.6
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 2.9e-140 502.3 329 75.7
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 2.9e-140 502.3 340 74.4
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 3.8e-140 501.9 312 78.2
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 5.0e-140 501.5 340 74.7
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 6.5e-140 501.1 312 78.2
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 1.5e-139 500.0 324 75.0
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.5e-139 499.2 330 74.8
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 2.5e-139 499.2 333 73.9
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 7.2e-139 497.7 333 73.3
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 9.5e-139 497.3 328 73.8
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 1.6e-138 496.5 328 75.6
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 2.1e-138 496.1 333 73.3
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 2.8e-138 495.7 329 72.9
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 3.6e-138 495.4 307 78.5
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 8.0e-138 494.2 331 73.1
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 3.0e-137 492.3 330 72.1
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 4.0e-137 491.9 335 72.2
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 1.5e-136 490.0 312 76.3
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 7.5e-136 487.6 333 72.1
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 1.3e-135 486.9 328 72.3
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 3.7e-135 485.3 339 71.1
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 3.7e-135 485.3 338 71.6
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 6.3e-135 484.6 312 75.6
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 1.1e-134 483.8 334 72.5
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 1.4e-134 483.4 313 76.0
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 1.4e-134 483.4 312 74.7
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 9.2e-134 480.7 356 69.4
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 1.2e-133 480.3 329 72.3
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 1.6e-133 479.9 334 71.6
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 2.0e-133 479.6 341 72.7
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 7.8e-133 477.6 330 71.5
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 1.0e-132 477.2 335 69.3
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 2.9e-132 475.7 337 72.7
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 1.9e-131 473.0 335 69.9
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 1.9e-131 473.0 331 71.6
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 1.9e-131 473.0 335 68.7
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 4.3e-131 471.9 338 70.7
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 7.3e-131 471.1 346 66.8
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 2.8e-130 469.2 339 68.7
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 3.6e-130 468.8 309 71.8
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 8.0e-130 467.6 338 70.4
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 2.3e-129 466.1 334 69.2
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 9.8e-128 460.7 330 70.3
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 1.3e-127 460.3 330 69.7
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 1.7e-127 459.9 343 71.4
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 3.7e-127 458.8 334 68.3
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 6.4e-127 458.0 307 73.6
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 8.3e-127 457.6 308 72.1
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 8.3e-127 457.6 331 68.3
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 7.0e-126 454.5 337 68.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.0e-125 451.4 294 74.1
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 1.0e-124 450.7 307 72.0
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 5.0e-124 448.4 336 69.6
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 1.5e-123 446.8 336 69.3
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 4.3e-123 445.3 308 71.8
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 2.8e-122 442.6 308 72.1
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 2.8e-122 442.6 341 66.9
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.0e-122 441.0 284 74.3
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 1.1e-121 440.7 336 69.0
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 1.4e-121 440.3 306 71.6
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 1.4e-121 440.3 306 71.6
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 1.8e-121 439.9 309 71.2
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 2.3e-121 439.5 268 77.6
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 6.8e-121 438.0 318 69.8
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 4.4e-120 435.3 281 74.0
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 5.8e-120 434.9 306 70.6
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 5.8e-120 434.9 306 70.6
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 7.5e-120 434.5 306 70.6
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 2.9e-119 432.6 248 83.9
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 3.7e-119 432.2 332 64.8
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 4.9e-119 431.8 232 89.2
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 6.4e-119 431.4 340 64.4
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 1.6e-117 426.8 315 68.6
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 2.3e-116 422.9 317 66.6
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 4.3e-115 418.7 334 63.5
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.1e-114 416.4 271 73.4
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 5.4e-110 401.7 289 70.6
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 9.2e-110 401.0 256 75.4
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.9e-107 393.3 216 85.2
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 1.4e-102 377.1 308 62.0
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.8e-97 360.1 332 56.6
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 8.7e-92 341.3 183 88.5
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 8.7e-92 341.3 183 88.5
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 1.9e-91 340.1 319 54.2
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 4.3e-91 339.0 231 68.4
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 2.7e-85 319.7 241 66.8
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 3.9e-84 315.8 335 48.4
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 2.1e-74 283.5 196 70.9
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 1.1e-70 271.2 200 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 1.6e-66 257.3 189 64.6
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 6.5e-63 245.4 149 78.5
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 1.7e-58 230.7 201 58.2
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 7.0e-41 172.2 167 50.9
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 2.1e-37 160.6 149 57.7
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 7.7e-32 142.1 78 84.6
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 4.1e-25 119.8 115 49.6
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.0e-20 105.1 66 77.3
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 5.8e-11 72.8 52 67.3
Sed0001393 Sechium edule HOM05D006818 ORTHO05D372820 8.3e-10 68.9 255 29.4
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 2.7e-08 63.9 175 30.3
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 4.6e-08 63.2 182 33.0
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 1.0e-07 62.0 171 33.3
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 1.0e-07 62.0 171 33.3
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 1.0e-07 62.0 168 31.0
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 1.0e-07 62.0 168 31.5
C09p49990 Brassica napus HOM05D003204 ORTHO05D003566 2.3e-07 60.8 180 28.9
BolC9t57852H Brassica oleracea HOM05D003204 ORTHO05D003566 2.3e-07 60.8 180 28.9
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 3.0e-07 60.5 171 32.7
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 3.0e-07 60.5 171 32.7
Eucgr.C04044 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.0e-07 60.5 169 32.5
Eucgr.L00627 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.0e-07 60.5 169 32.5
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 5.0e-07 59.7 170 28.8
C02p13620 Brassica napus HOM05D003204 ORTHO05D003566 5.0e-07 59.7 171 32.7
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 6.6e-07 59.3 171 29.8
BcaC04g19909 Brassica carinata HOM05D003204 ORTHO05D003566 6.6e-07 59.3 171 29.2
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 6.6e-07 59.3 171 29.8
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 6.6e-07 59.3 171 29.8
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 6.6e-07 59.3 181 30.4
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 6.6e-07 59.3 181 30.4
CAN.G520.7 Capsicum annuum HOM05D003204 ORTHO05D003566 8.6e-07 58.9 178 31.5
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 8.6e-07 58.9 171 26.9
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 1.1e-06 58.5 168 29.8
A10p16100 Brassica napus HOM05D003204 ORTHO05D003566 1.1e-06 58.5 171 29.2
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 1.5e-06 58.2 169 31.4
Sopen07g001560 Solanum pennellii HOM05D003204 ORTHO05D003566 1.5e-06 58.2 179 32.4
BcaC03g14124 Brassica carinata HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 32.2
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 29.2
BolC2t07474H Brassica oleracea HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 32.2
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 29.2
Migut.K00344 Erythranthe guttata HOM05D003204 ORTHO05D003566 1.9e-06 57.8 169 32.5
Eucgr.C00377 Eucalyptus grandis HOM05D003204 ORTHO05D003566 1.9e-06 57.8 167 30.5
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 1.9e-06 57.8 168 29.8
Manes.14G141400 Manihot esculenta HOM05D003204 ORTHO05D003566 2.5e-06 57.4 169 31.4
CAN.G551.27 Capsicum annuum HOM05D003204 ORTHO05D003566 3.3e-06 57.0 169 30.8
Thhalv10014775m.g Eutrema salsugineum HOM05D003204 ORTHO05D003566 3.3e-06 57.0 168 31.0
FvH4_1g01260 Fragaria vesca HOM05D003204 ORTHO05D003566 3.3e-06 57.0 172 30.2
BraA10t43619Z Brassica rapa HOM05D003204 ORTHO05D003566 5.6e-06 56.2 171 28.7
COL.COLO4_18771 Corchorus olitorius HOM05D003204 ORTHO05D003566 5.6e-06 56.2 169 31.4
Glyma.13G155200 Glycine max HOM05D003204 ORTHO05D003566 5.6e-06 56.2 179 27.9
THA.LOC104811838 Tarenaya hassleriana HOM05D003204 ORTHO05D003566 5.6e-06 56.2 171 28.1
VMungo1309G2170 Vigna mungo HOM05D003204 ORTHO05D003566 5.6e-06 56.2 168 29.2
AL8G34170 Arabidopsis lyrata HOM05D003204 ORTHO05D003566 7.3e-06 55.8 168 29.8
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 7.3e-06 55.8 169 30.8


User provided reference genes

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